Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5463

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5462: 13830 - HMMPfam-Bacteriorhodopsin-like protein-PF01036,PRINTS-Bacterial opsin signature-PR00251,ProSitePatterns-Bacterial rhodopsins signature 1.-PS00950,SMART-Bacteriorhodopsin-like protein-SM01021,SUPERFAMILY--SSF81321, at 148438 to 149863 13830 mRNA_5463: 13831 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 150414 to 154047 13831 mRNA_5464: 13832 - K09579 PIN4 peptidyl-prolyl cis-trans isomerase NIMA-interacting 4, at 155001 to 155781 13832

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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149,447 + 13830 mRNA_5462 0.71 2.0
149,450 - 13830 mRNA_5462 0.71 -0.2
149,498 - 13830 mRNA_5462 0.74 -1.3
149,572 + 13830 mRNA_5462 0.80 -3.5
149,680 + 13830 mRNA_5462 0.87 0.8
149,932 + -0.2
150,239 - 0.3
150,328 + -0.1
150,393 - -1.3
150,536 + -0.6
150,671 + 0.8
151,138 + 13831 mRNA_5463 0.20 0.4
151,315 - 13831 mRNA_5463 0.25 -0.9
151,548 - 13831 mRNA_5463 0.31 0.2
151,602 - 13831 mRNA_5463 0.33 0.2
151,650 + 13831 mRNA_5463 0.34 -0.2
152,149 + 13831 mRNA_5463 0.48 0.9
152,311 + 13831 mRNA_5463 0.52 0.7
152,320 - 13831 mRNA_5463 0.52 -0.1
152,599 + 13831 mRNA_5463 0.60 -0.9
152,644 + 13831 mRNA_5463 0.61 -0.1
152,684 - 13831 mRNA_5463 0.62 0.1
152,899 - 13831 mRNA_5463 0.68 1.4
152,995 + 13831 mRNA_5463 0.71 1.0
153,020 - 13831 mRNA_5463 0.72 0.1
153,645 + 13831 mRNA_5463 0.89 0.5
153,668 + 13831 mRNA_5463 0.90 -0.3
153,774 - -0.1
153,813 - 0.4
153,820 - -0.2
153,921 - 0.4
153,924 - -2.0
153,932 - 0.3
153,934 - 1.2
153,939 - 0.8
153,940 - 0.4
153,944 + 0.4
153,946 + -2.8
153,949 + 0.2
153,949 - 0.2
153,957 + -0.5
153,958 - 1.2
153,959 + 1.3
153,961 + -0.2
153,961 - -0.8
153,963 + 0.6
153,964 - -0.0
153,967 + -0.0
153,967 + -1.0
153,968 + -0.7
153,970 - 0.8
153,981 + -1.1
154,101 - 0.9
154,110 + -1.7
154,110 + -0.1
154,116 + 0.9
154,129 - 0.8
154,130 - -2.1
154,131 + 1.1
154,132 - -0.1
154,133 - -2.4
154,143 + -0.1
154,153 - 0.9
154,156 + 1.1
154,157 + -0.6
154,170 + 1.3
154,204 + 2.4
154,204 - -0.4
154,204 + -0.1
154,250 + 1.0
154,267 - 0.5
154,284 + 0.8
154,285 - 0.4
154,301 - -0.5
154,301 - 1.7
154,310 - -1.3
154,316 - 1.5
154,320 - -1.1
154,320 - 0.9
154,321 + 1.1
154,324 + 0.0
154,327 - 2.5
154,330 - 0.5
154,332 + -1.6
154,337 - 1.2
154,350 + 0.2
154,437 + -0.9
154,450 + -1.2
154,455 - 1.5
154,460 + 0.4
154,473 - 1.1
154,491 + -2.2
154,495 - -0.4
154,546 + -0.7
154,552 + 1.4
154,564 + 0.2
154,579 + -1.1
154,581 + -1.3
154,592 - 0.7
154,599 - 0.3
154,681 - 0.0
154,685 + 0.0
154,710 - 0.2
154,723 + 0.0
154,738 + -0.4
154,753 - 0.7
154,764 - 0.2
154,764 - -0.1
154,771 + 0.2
154,773 - 0.2
154,814 + -0.6
154,930 - 0.2