Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5332

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5331: 13699 - SUPERFAMILY--SSF52047, at 473951 to 475290 13699 mRNA_5332: 13700 - K01904 4CL 4-coumarate--CoA ligase, at 475424 to 477955 13700 mRNA_5333: 13701 - ProSiteProfiles-Ribonuclease III family domain profile.-PS50142,SUPERFAMILY--SSF69065, at 478191 to 479250 13701

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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474,460 + 13699 mRNA_5331 0.38 -0.7
474,565 - 13699 mRNA_5331 0.46 0.2
474,752 - 13699 mRNA_5331 0.60 0.9
474,773 + 13699 mRNA_5331 0.61 -0.1
475,027 - 13699 mRNA_5331 0.80 -0.8
475,044 + 13699 mRNA_5331 0.82 -0.3
475,166 + 1.1
475,288 - 1.9
475,360 - -0.0
475,363 - -0.7
475,383 + 0.2
475,392 + -0.9
475,399 - 0.1
475,404 + 1.8
475,530 + 1.1
475,546 + 0.4
475,679 - 13700 mRNA_5332 0.10 0.8
476,090 - 13700 mRNA_5332 0.26 0.6
476,133 + 13700 mRNA_5332 0.28 -0.1
476,134 - 13700 mRNA_5332 0.28 1.8
476,400 + 13700 mRNA_5332 0.39 0.6
476,411 + 13700 mRNA_5332 0.39 0.2
476,656 + 13700 mRNA_5332 0.49 -0.0
477,115 - 13700 mRNA_5332 0.67 -1.9
477,269 - 13700 mRNA_5332 0.73 -1.5
477,299 + 13700 mRNA_5332 0.74 0.8
477,388 + 13700 mRNA_5332 0.78 -1.1
477,431 - 13700 mRNA_5332 0.79 -0.8
477,687 - 13700 mRNA_5332 0.89 1.7
477,945 + -1.7
478,546 - 13701 mRNA_5333 0.33 1.3
478,557 - 13701 mRNA_5333 0.35 -0.8
478,564 + 13701 mRNA_5333 0.35 -1.4
478,870 - 13701 mRNA_5333 0.64 -0.1
478,897 - 13701 mRNA_5333 0.67 2.2
478,904 + 13701 mRNA_5333 0.67 2.1