Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5290

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370278 to 371436 13659

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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364,965 - 13657 mRNA_5289 0.66 -0.7
365,130 + 13657 mRNA_5289 0.76 -0.8
365,141 - 13657 mRNA_5289 0.77 0.1
365,286 - 13657 mRNA_5289 0.86 2.5
365,368 - -0.5
365,385 + -1.2
365,404 - -0.7
365,474 - -0.2
365,710 - 0.4
365,714 + -0.7
365,733 + -0.4
365,865 + -0.0
365,890 - -0.7
365,936 - -2.1
365,976 + 1.6
366,004 + -0.7
366,146 - -2.0
366,151 + -1.1
366,159 - -0.7
366,168 + -0.2
366,172 + -1.0
366,351 + 13658 mRNA_5290 0.11 0.1
366,989 + 13658 mRNA_5290 0.27 0.4
367,083 + 13658 mRNA_5290 0.29 2.7
367,154 - 13658 mRNA_5290 0.31 0.5
367,251 + 13658 mRNA_5290 0.34 2.6
367,326 + 13658 mRNA_5290 0.35 -0.7
367,681 - 13658 mRNA_5290 0.44 0.2
367,719 + 13658 mRNA_5290 0.45 -2.0
367,728 + 13658 mRNA_5290 0.46 -0.4
367,818 + 13658 mRNA_5290 0.48 -0.2
368,441 + 13658 mRNA_5290 0.64 -0.6
368,600 + 13658 mRNA_5290 0.68 0.1
368,997 + 13658 mRNA_5290 0.78 0.7
369,132 - 13658 mRNA_5290 0.81 0.9
369,165 + 13658 mRNA_5290 0.82 -1.3
369,547 - 0.4
369,581 - 1.4
369,591 + 1.4
369,694 - -1.5
369,730 + 0.5
369,743 - 0.3
369,743 + 0.1
369,873 + -0.6
369,885 - 0.4
369,900 + -0.7
369,902 - -1.6
370,012 - -0.1
370,020 - 2.6
370,020 - -0.8
370,021 - -0.5
370,033 + -1.5
370,036 + 0.5
370,039 - -0.4
370,039 - -0.2
370,043 + -2.3
370,070 - 0.1
370,091 - -0.3
370,095 + 1.5
370,097 + -0.1
370,202 + 2.1
370,489 - 13659 mRNA_5291 0.18 -0.9
370,521 + 13659 mRNA_5291 0.21 0.5
370,738 - 13659 mRNA_5291 0.40 -0.1
370,786 - 13659 mRNA_5291 0.44 0.1