Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5253

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276429 to 278610 13620 mRNA_5253: 13621 - Hypothetical Protein, at 278991 to 279822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280539 to 283748 13622

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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278,541 - -0.5
278,582 - 0.9
278,711 + 1.1
279,552 - 13621 mRNA_5253 0.67 -1.2
279,561 - 13621 mRNA_5253 0.69 0.4
279,710 - 13621 mRNA_5253 0.86 -0.8
279,710 - 13621 mRNA_5253 0.86 0.3
279,719 + 13621 mRNA_5253 0.88 -0.4
279,839 - -0.6
279,864 + 0.9
279,872 - -2.0
279,886 + 0.1
279,892 + -1.2
279,893 - 0.6
279,971 + -1.3
280,091 + -1.8
280,107 + 1.5
280,131 + -2.3
280,157 + 0.8
280,324 - 1.0
280,492 + 0.5
280,706 + -0.2