Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5232

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5231: 13599 - Hypothetical Protein, at 216501 to 218178 13599 mRNA_5232: 13600 - SUPERFAMILY--SSF52047, at 218691 to 220745 13600 mRNA_5233: 13601 - HMMPfam-Transmembrane amino acid transporter protein-PF01490, at 221714 to 224141 13601

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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217,716 - 13599 mRNA_5231 0.72 -0.6
217,723 - 13599 mRNA_5231 0.73 -0.5
217,739 + 13599 mRNA_5231 0.74 -0.1
217,845 - 13599 mRNA_5231 0.80 0.8
217,861 - 13599 mRNA_5231 0.81 -1.8
217,877 + 13599 mRNA_5231 0.82 -0.6
217,896 - 13599 mRNA_5231 0.83 -0.3
218,022 - -0.4
218,024 + -0.2
218,030 - -3.1
218,030 - 0.4
218,031 - -0.3
218,045 - 1.2
218,046 + -0.9
218,054 - -0.7
218,054 - -0.1
218,055 + 1.0
218,055 + -0.2
218,059 + 1.8
218,062 - -1.7
218,063 - 0.9
218,064 + 0.6
218,066 - 0.8
218,068 + -2.1
218,072 - 0.4
218,074 + 1.2
218,074 - 0.2
218,080 + -0.3
218,093 + -0.7
218,096 + 0.2
218,099 - 1.3
218,105 - -1.0
218,120 + 0.7
218,128 - -0.5
218,133 - -1.0
218,142 - 2.0
218,147 + -0.5
218,158 - -0.3
218,160 + -0.3
218,160 + -1.3
218,162 + 0.1
218,164 + -0.6
218,165 + -0.1
218,165 - -1.4
218,166 + 0.0
218,218 - -0.5
218,220 - -0.2
218,245 + 0.1
218,247 + -1.8
218,263 + -0.3
218,294 + 0.2
218,295 - -0.8
218,324 - 1.3
218,328 - -0.2
218,334 - -0.2
218,334 + -0.2
218,337 - -1.6
218,338 - -0.0
218,339 + 0.1
218,341 + -0.6
218,411 + 0.4
218,411 + 1.1
218,505 - 1.8
218,510 - -0.2
218,641 + 1.4
218,658 - 1.2
218,659 - -0.1
218,659 + -2.8
218,933 + 13600 mRNA_5232 0.12 -1.1
218,936 + 13600 mRNA_5232 0.12 2.3
218,937 - 13600 mRNA_5232 0.12 0.2
219,076 + 13600 mRNA_5232 0.19 -1.9
219,080 - 13600 mRNA_5232 0.19 0.5
219,227 - 13600 mRNA_5232 0.26 1.9
219,525 + 13600 mRNA_5232 0.41 2.1
219,667 - 13600 mRNA_5232 0.47 0.3
219,792 - 13600 mRNA_5232 0.54 -1.0
220,665 - -1.3
220,761 + -0.3
220,803 + -1.5
220,809 + -1.2
220,811 - -0.8
220,937 - -0.8
220,942 - 1.3
220,948 + -1.8
220,965 - -0.2
220,965 + -1.3
220,991 + -0.4
220,993 - -1.7
221,027 + 1.9
221,043 - -0.8
221,044 + -0.5
221,062 - 1.1
221,062 - -1.8
221,064 - 2.0
221,072 - -0.2
221,075 - -2.6
221,081 - 1.5
221,094 + -0.4
221,100 - 0.0
221,101 + 0.0
221,102 - 1.2
221,103 + 1.7
221,105 + -1.0
221,106 - -1.1
221,107 + 1.7
221,123 + -0.8
221,136 + -0.3
221,145 - 1.3
221,146 + 0.2
221,152 + 0.3
221,171 + -0.3
221,179 + 1.8
221,191 - -0.6
221,203 - -1.3
221,204 - -0.8
221,217 + -1.5
221,217 - -1.7
221,219 - -0.4
221,249 + -0.3
221,253 - 0.5
221,253 - -3.5
221,295 + -0.0
221,310 - 2.6
221,318 + -0.6
221,350 + -0.1
221,362 + -1.1
221,368 - -1.5
221,370 + -0.1
221,380 + -0.4
221,381 + 0.3
221,396 + 0.4
221,398 - -0.3
221,398 + -0.1
221,405 + -0.7
221,405 + -0.3
221,411 - 0.6
221,411 + -2.1
221,411 - -0.3
221,412 - -0.4
221,415 + 1.8
221,419 + 1.4
221,419 + -2.3
221,431 + 1.3
221,460 + -0.4
221,465 - -1.2
221,477 - 0.8
221,501 + 1.6
221,508 - 1.3
221,530 + -0.0
221,535 - 1.7
221,535 + 0.4
221,540 - -0.1
221,540 + -0.6
221,540 + -0.1
221,547 + -1.0
221,548 + 1.5
221,552 - -0.4
221,552 + 1.1
221,555 - 1.1
221,555 - -0.9
221,558 + 0.6
221,683 + 0.5
221,707 + -0.2
221,710 + 0.2