Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5223

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5222: 13590 - Hypothetical Protein, at 187738 to 188641 13590 mRNA_5223: 13591 - Hypothetical Protein, at 189064 to 190572 13591 mRNA_5224: 13592 - KOG0001 Ubiquitin and ubiquitin-like proteins, at 190897 to 192363 13592

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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188,189 + 13590 mRNA_5222 0.50 -1.8
188,435 + 13590 mRNA_5222 0.77 0.6
188,604 - 0.6
188,663 + -0.0
188,901 + -0.3
188,973 - 2.3
189,016 - -0.6
189,038 + -0.5
189,041 + -0.3
189,046 - -0.0
189,048 + 1.0
189,227 + 13591 mRNA_5223 0.11 -0.5
189,379 + 13591 mRNA_5223 0.21 -0.9
189,453 - 13591 mRNA_5223 0.26 -0.0
189,475 - 13591 mRNA_5223 0.27 -2.3
189,490 + 13591 mRNA_5223 0.28 2.1
189,620 - 13591 mRNA_5223 0.37 -0.3
189,721 + 13591 mRNA_5223 0.44 0.8
189,759 - 13591 mRNA_5223 0.46 -1.1
189,871 + 13591 mRNA_5223 0.53 -1.2
189,876 - 13591 mRNA_5223 0.54 -1.7
189,892 - 13591 mRNA_5223 0.55 -0.2
189,895 + 13591 mRNA_5223 0.55 0.1
190,047 - 13591 mRNA_5223 0.65 0.6
190,069 + 13591 mRNA_5223 0.67 -0.6
190,327 - 13591 mRNA_5223 0.84 -0.9
190,343 + 13591 mRNA_5223 0.85 -2.2
190,385 - 13591 mRNA_5223 0.88 2.1
190,385 - 13591 mRNA_5223 0.88 0.2
190,403 - 13591 mRNA_5223 0.89 0.2
190,765 - -1.0
190,771 - 0.2
190,781 - -2.5
190,879 + -2.4
190,941 - 2.2
190,943 + 1.8
190,960 + -0.3
191,055 + 13592 mRNA_5224 0.11 0.2
191,086 + 13592 mRNA_5224 0.13 0.2
191,096 - 13592 mRNA_5224 0.14 -0.9
191,104 - 13592 mRNA_5224 0.14 0.3
191,117 + 13592 mRNA_5224 0.15 -0.3
191,197 + 13592 mRNA_5224 0.20 0.7
191,232 - 13592 mRNA_5224 0.23 0.3
191,266 + 13592 mRNA_5224 0.25 1.8
191,282 + 13592 mRNA_5224 0.26 0.3