Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5213

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5212: 13580 - K00624 E2.3.1.7 carnitine O-acetyltransferase, at 159635 to 162568 13580 mRNA_5213: 13581 - Hypothetical Protein, at 163193 to 164200 13581 mRNA_5214: 13582 - K03845 ALG3 alpha-1,3-mannosyltransferase, at 164395 to 166467 13582

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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162,534 - -0.9
162,659 + -0.6
162,665 - 1.3
162,667 + 3.6
162,673 - 2.2
162,673 + 0.5
162,673 + -0.2
162,684 - -0.4
162,686 + 0.3
162,688 + 1.2
162,690 - -1.2
162,709 - -1.3
162,712 + -0.2
162,713 - 0.6
162,713 - 0.9
162,713 + 0.0
162,716 + -0.0
162,718 + -1.3
162,720 + -0.4
162,742 - -0.4
162,748 + -2.1
162,761 - 1.5
162,779 - -0.3
162,782 - -0.9
162,792 - 0.2
162,806 - -0.9
162,807 - 2.2
162,822 + 0.8
162,835 - -1.3
162,863 + 0.8
162,879 + 2.9
162,981 + 1.1
163,070 - -0.0
163,385 + 13581 mRNA_5213 0.19 0.2
163,453 - 13581 mRNA_5213 0.26 -0.1
163,668 + 13581 mRNA_5213 0.47 1.0
163,734 + 13581 mRNA_5213 0.54 2.5
163,948 + 13581 mRNA_5213 0.75 0.1
163,995 + 13581 mRNA_5213 0.80 1.4
164,058 + 13581 mRNA_5213 0.86 0.8
164,492 - 0.4
164,788 + 13582 mRNA_5214 0.19 -1.0
164,857 - 13582 mRNA_5214 0.22 0.4
164,941 - 13582 mRNA_5214 0.26 0.4
164,967 - 13582 mRNA_5214 0.28 -0.1
164,995 + 13582 mRNA_5214 0.29 -1.4