Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5199

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5198: 13566 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 131412 to 133498 13566 mRNA_5199: 13567 - K01210 E3.2.1.58 glucan 1,3-beta-glucosidase, at 133607 to 137030 13567 mRNA_5200: 13568 - Hypothetical Protein, at 137334 to 138235 13568

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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132,743 + 13566 mRNA_5198 0.64 0.1
132,984 - 13566 mRNA_5198 0.75 0.4
133,143 - 13566 mRNA_5198 0.83 -0.3
133,524 + -0.6
133,552 + -1.7
133,626 - 2.2
133,643 - 2.5
133,665 - -0.4
133,684 - -2.2
133,695 + -0.3
133,736 + -0.4
133,739 + -0.2
133,902 - 2.5
134,473 - 13567 mRNA_5199 0.25 0.0
134,775 - 13567 mRNA_5199 0.34 1.9
134,920 + 13567 mRNA_5199 0.38 1.1
135,204 + 13567 mRNA_5199 0.47 2.0
135,208 - 13567 mRNA_5199 0.47 1.4
135,649 + 13567 mRNA_5199 0.60 2.3
135,670 + 13567 mRNA_5199 0.60 1.2
135,701 - 13567 mRNA_5199 0.61 -0.8
135,831 + 13567 mRNA_5199 0.65 2.1
136,288 + 13567 mRNA_5199 0.78 0.3
136,361 - 13567 mRNA_5199 0.80 -0.1
136,545 + 13567 mRNA_5199 0.86 0.3
136,567 + 13567 mRNA_5199 0.86 -0.5
136,851 + 0.1
136,898 + -0.6
137,007 - -0.4
137,161 + 0.9
137,172 - 0.6
137,305 + -0.1
137,438 + 13568 mRNA_5200 0.12 1.0
137,449 + 13568 mRNA_5200 0.13 1.7
137,454 - 13568 mRNA_5200 0.13 1.3
137,458 - 13568 mRNA_5200 0.14 -0.8
137,480 - 13568 mRNA_5200 0.16 -2.4
137,482 + 13568 mRNA_5200 0.16 0.1
137,519 + 13568 mRNA_5200 0.21 -1.1
137,589 + 13568 mRNA_5200 0.28 -0.6
137,594 + 13568 mRNA_5200 0.29 0.5
137,610 + 13568 mRNA_5200 0.31 -0.2
137,687 + 13568 mRNA_5200 0.39 -0.6
137,909 + 13568 mRNA_5200 0.64 -1.0
138,022 - 13568 mRNA_5200 0.76 0.9