Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5156

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5155: 13523 - BLAST unknown [Tremella fuciformis], at 30718 to 32151 13523 mRNA_5156: 13524 - K00108 betA, CHDH choline dehydrogenase, at 32964 to 35897 13524 mRNA_5157: 13525 - K11976 RNF216 TRIAD3 E3 ubiquitin-protein ligase RNF216, at 36318 to 38711 13525

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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32,279 - 1.6
32,281 - 0.4
32,367 + -1.0
32,367 + -1.7
32,371 + 0.9
32,375 + 0.2
32,377 - 0.5
32,387 - 1.0
32,387 - 1.4
32,387 - 0.9
32,387 - 0.7
32,395 + 0.3
32,395 + 2.1
32,395 + -0.3
32,395 + 0.5
32,395 + -0.1
32,503 - 1.9
32,554 + 2.2
32,562 + 0.2
32,708 + 4.0
32,710 + -0.1
32,783 + -0.6
32,809 + 1.4
32,835 + -0.4
32,859 + 1.2
32,893 - 0.6
32,898 - -0.1
33,147 - 0.5
33,182 - 0.1
33,268 - 13524 mRNA_5156 0.10 -1.1
33,285 - 13524 mRNA_5156 0.11 1.1
33,452 - 13524 mRNA_5156 0.17 2.0
33,461 - 13524 mRNA_5156 0.17 0.2
33,463 - 13524 mRNA_5156 0.17 0.7
33,482 + 13524 mRNA_5156 0.18 1.1
33,508 + 13524 mRNA_5156 0.19 -0.4
33,613 + 13524 mRNA_5156 0.22 -0.4
33,869 + 13524 mRNA_5156 0.31 -0.3
33,885 + 13524 mRNA_5156 0.31 0.8
34,645 - 13524 mRNA_5156 0.57 -0.7
34,665 - 13524 mRNA_5156 0.58 -1.1
34,809 - 13524 mRNA_5156 0.63 0.2
34,960 - 13524 mRNA_5156 0.68 0.8
34,961 - 13524 mRNA_5156 0.68 -0.1
34,998 + 13524 mRNA_5156 0.69 2.1
35,406 - 13524 mRNA_5156 0.83 0.6
35,499 - 13524 mRNA_5156 0.86 0.1
35,517 + 13524 mRNA_5156 0.87 -0.7
35,667 - -0.7
35,828 - 0.2
35,836 + -0.4
35,981 - -2.3
36,100 + -1.3
36,103 - 0.1
36,108 + -1.4
36,154 - -1.0
36,161 + 0.5
36,296 + 1.6
36,535 - 1.0
36,535 - -0.9
36,579 - 13525 mRNA_5157 0.11 0.1
36,585 + 13525 mRNA_5157 0.11 -0.7
36,662 + 13525 mRNA_5157 0.14 0.5
36,693 + 13525 mRNA_5157 0.16 -0.1
36,834 + 13525 mRNA_5157 0.22 1.3
36,847 + 13525 mRNA_5157 0.22 1.8