Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5152

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5151: 13519 - HMMPfam-SUR7/PalI family-PF06687, at 22943 to 24220 13519 mRNA_5152: 13520 - HMMPfam-Domain of unknown function (DUF4336)-PF14234,SUPERFAMILY--SSF56281, at 24796 to 26164 13520 mRNA_5153: 13521 - HMMPfam-Secretory lipase-PF03583,PIRSF--PIRSF029171,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257,SUPERFAMILY--SSF53474, at 26390 to 28027 13521

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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24,019 - 13519 mRNA_5151 0.84 0.6
24,139 + -0.1
24,144 - 0.8
24,149 - 0.7
24,153 + -0.2
24,153 - 0.4
24,155 - -1.0
24,160 - 0.3
24,162 + 1.0
24,164 + -0.2
24,166 + 1.5
24,177 + 2.2
24,184 + -0.0
24,292 - -1.2
24,301 + -0.1
24,307 + -0.9
24,346 + 1.2
24,362 - 0.1
24,369 - 1.3
24,450 - -0.1
24,463 + -0.7
24,465 + -0.2
24,476 + -0.3
24,488 + 0.5
24,518 + -1.5
24,519 - 0.2
24,521 - -0.6
24,528 + 1.0
24,572 - -0.2
24,649 + -0.2
24,743 + -0.0
24,910 + -0.7
24,913 + 0.2
25,051 + 13520 mRNA_5152 0.19 0.7
25,217 + 13520 mRNA_5152 0.31 0.5
25,507 + 13520 mRNA_5152 0.52 -1.3
25,738 + 13520 mRNA_5152 0.69 -1.5
25,768 - 13520 mRNA_5152 0.71 -0.5
25,772 - 13520 mRNA_5152 0.71 -1.0
25,811 + 13520 mRNA_5152 0.74 0.0
25,917 + 13520 mRNA_5152 0.82 1.0
25,923 - 13520 mRNA_5152 0.82 0.2
25,952 + 13520 mRNA_5152 0.84 1.4
25,974 - 13520 mRNA_5152 0.86 -0.6
26,033 + 0.0
26,065 - 1.3
26,078 + 0.0
26,083 + 0.8
26,083 + -0.7
26,217 + 0.1
26,245 - 0.4
26,534 + 2.5
26,614 + 13521 mRNA_5153 0.14 -0.1
26,778 - 13521 mRNA_5153 0.24 1.0
26,792 - 13521 mRNA_5153 0.25 0.9
26,932 + 13521 mRNA_5153 0.33 0.8
27,057 - 13521 mRNA_5153 0.41 0.5
27,091 - 13521 mRNA_5153 0.43 2.1