Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5121

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1806857 to 1808752 13488 mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1809104 to 1811514 13489 mRNA_5122: 13490 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1811957 to 1814516 13490

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,808,867 + -0.5
1,808,911 - -0.0
1,808,986 + 0.4
1,809,596 + 13489 mRNA_5121 0.20 0.8
1,810,038 - 13489 mRNA_5121 0.39 0.6
1,810,039 + 13489 mRNA_5121 0.39 0.0
1,810,338 + 13489 mRNA_5121 0.51 0.3
1,810,480 + 13489 mRNA_5121 0.57 -0.8
1,810,482 + 13489 mRNA_5121 0.57 0.7
1,811,061 - 13489 mRNA_5121 0.81 1.4
1,811,194 - 13489 mRNA_5121 0.87 0.5
1,811,194 - 13489 mRNA_5121 0.87 1.1
1,811,203 - 13489 mRNA_5121 0.87 1.7
1,811,284 - 0.8
1,811,288 + -0.5
1,811,315 - 0.3
1,811,345 + -0.3
1,811,488 - -0.6
1,811,489 - 0.3
1,811,496 + 1.6
1,811,501 + 1.4
1,811,502 + -0.5
1,811,524 + -0.7
1,811,532 + -0.7
1,811,540 + -0.1
1,811,543 + 0.1
1,811,550 - 1.0
1,811,563 - -2.1
1,811,579 - -0.6
1,811,580 + 0.7
1,811,587 - 0.4
1,811,588 + 0.2
1,811,594 + -0.8
1,811,617 + -0.4
1,811,618 + 0.1
1,811,621 + 1.0
1,811,623 + -2.1
1,811,629 + 0.4
1,811,747 + 0.1
1,811,759 - -0.3
1,811,775 + 1.1
1,811,799 - -0.7
1,811,818 + -0.1
1,812,095 - 0.2