Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5031

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5030: 13398 - K01889 FARSA, pheS phenylalanyl-tRNA synthetase alpha chain, at 1592734 to 1594516 13398 mRNA_5031: 13399 - HMMPfam-PAS fold-PF00989,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,ProSiteProfiles-PAS repeat profile.-PS50112,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF55785, at 1595047 to 1597304 13399 mRNA_5032: 13400 - Hypothetical Protein, at 1597807 to 1600574 13400

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,594,633 - -0.8
1,594,637 - 1.5
1,594,643 + -0.6
1,594,647 - -0.7
1,594,648 - 1.6
1,594,653 + -0.3
1,594,653 + 0.4
1,594,654 + 0.7
1,594,660 + -3.6
1,594,661 - 0.5
1,594,662 - -0.1
1,594,672 - 0.8
1,594,799 - -2.0
1,594,816 + 0.2
1,594,826 + -0.2
1,594,937 - 0.6
1,594,942 + -0.3
1,594,945 + -0.2
1,595,091 + -0.6
1,595,100 - 4.4
1,595,111 + -0.8
1,595,417 - 13399 mRNA_5031 0.16 0.8
1,595,512 - 13399 mRNA_5031 0.21 -1.4
1,595,653 - 13399 mRNA_5031 0.27 2.2
1,595,678 + 13399 mRNA_5031 0.28 0.0
1,595,821 + 13399 mRNA_5031 0.34 0.4
1,596,143 - 13399 mRNA_5031 0.49 1.2
1,596,279 + 13399 mRNA_5031 0.55 0.0
1,596,556 - 13399 mRNA_5031 0.67 2.1
1,596,557 - 13399 mRNA_5031 0.67 -0.5
1,596,568 + 13399 mRNA_5031 0.67 1.1
1,597,323 - -0.6
1,597,410 - -1.6
1,597,413 + -3.1
1,597,440 + -1.3
1,597,442 + 1.9
1,597,512 - -0.1
1,597,520 - -0.4
1,597,524 - -0.2
1,597,542 - 1.0
1,597,555 + -0.2
1,597,559 - 0.5
1,597,563 - 2.3
1,597,564 + 2.1
1,597,573 - -0.5
1,597,599 - 0.1
1,597,639 - -0.6
1,598,013 + 0.1
1,598,284 - 13400 mRNA_5032 0.17 2.0