Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5013

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5012: 13380 - K01886 QARS, glnS glutaminyl-tRNA synthetase, at 1542746 to 1545688 13380 mRNA_5013: 13381 - BLAST regulatory protein wetA [Paracoccidioides lutzii ..., at 1545921 to 1548060 13381

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,545,370 - 13380 mRNA_5012 0.89 0.5
1,545,682 + -1.8
1,546,444 + 13381 mRNA_5013 0.24 1.5
1,546,547 + 13381 mRNA_5013 0.29 1.6
1,546,547 - 13381 mRNA_5013 0.29 0.7
1,546,567 - 13381 mRNA_5013 0.30 0.3
1,547,000 - 13381 mRNA_5013 0.50 0.2
1,547,024 + 13381 mRNA_5013 0.52 1.5
1,547,167 - 13381 mRNA_5013 0.58 0.9
1,547,308 - 13381 mRNA_5013 0.65 0.7
1,547,357 - 13381 mRNA_5013 0.67 0.6
1,547,439 + 13381 mRNA_5013 0.71 -0.4
1,547,579 - 13381 mRNA_5013 0.77 2.1
1,547,614 - 13381 mRNA_5013 0.79 -0.0
1,547,770 - 13381 mRNA_5013 0.86 1.7
1,547,780 - 13381 mRNA_5013 0.87 -1.6
1,547,786 + 13381 mRNA_5013 0.87 -0.7
1,547,906 - 0.6
1,547,915 - 0.0
1,547,917 - 0.3
1,547,933 - 1.6
1,547,952 + 0.7
1,547,976 + -0.3
1,547,980 + 1.8
1,547,981 - -0.3
1,547,982 - -0.0
1,548,002 + -1.6
1,548,029 - -0.1
1,548,036 + -1.6
1,548,037 - 0.8
1,548,042 + 0.2
1,548,044 - -2.4
1,548,053 + 0.8
1,548,057 + 1.8
1,548,059 + 0.6
1,548,060 + 0.6
1,548,063 + 0.3
1,548,069 - 1.2
1,548,069 + 2.0
1,548,077 - 0.8
1,548,082 - 2.0
1,548,097 - -1.2
1,548,119 - -1.0
1,548,120 + 0.1
1,548,125 - -1.0
1,548,132 + -0.5
1,548,132 + 0.0
1,548,134 + -1.3
1,548,134 + -1.2
1,548,135 - 1.7
1,548,157 - 0.2
1,548,160 - 2.1
1,548,171 - -0.6
1,548,172 - -0.5
1,548,181 - -1.3
1,548,193 + -0.2
1,548,195 - -0.3
1,548,201 - 0.7
1,548,208 + -0.5
1,548,212 - -0.3
1,548,212 + 1.4
1,548,218 - -0.0
1,548,220 - -0.5
1,548,241 - 0.8
1,548,271 + 0.4
1,548,279 + 1.3
1,548,297 - -1.5
1,548,299 - -0.0
1,548,302 + 0.3
1,548,305 - -0.7
1,548,311 - -1.1
1,548,311 - 0.6
1,548,342 + -0.2
1,548,346 - -0.1
1,548,355 - -2.3
1,548,361 + 1.2
1,548,362 + 1.1
1,548,363 - -0.5
1,548,365 + 0.4
1,548,369 - -0.6
1,548,375 + -0.5
1,548,380 - 1.4
1,548,385 - -0.5
1,548,385 - 1.1
1,548,397 - 0.8
1,548,398 - -2.5
1,548,403 + 0.1
1,548,404 - 1.2
1,548,411 + 0.7
1,548,412 - 0.1
1,548,416 + 0.0
1,548,421 - 0.4
1,548,423 + 0.5
1,548,426 + 0.3
1,548,435 + 0.5
1,548,461 - 1.3
1,548,488 + 2.0
1,548,503 - -2.3
1,548,544 + 3.7
1,548,571 + 0.2
1,548,594 - 1.0
1,548,609 - -0.5
1,548,613 + 0.9
1,548,616 - 0.9
1,548,627 - 0.7
1,548,631 - -0.1
1,548,633 - -0.5
1,548,643 - 0.7
1,548,651 + 0.8
1,548,654 - 0.2
1,548,655 - 0.1
1,548,655 + -0.7
1,548,662 - -1.7
1,548,665 + -0.2
1,548,676 - -1.1
1,548,716 + -2.6
1,548,724 + 0.0
1,548,725 - 1.4
1,548,757 - 0.2
1,548,757 + 0.7
1,548,760 + -1.8
1,548,761 - -3.0
1,548,806 - -0.3
1,548,825 + -1.1
1,548,829 - -2.3
1,548,858 + 0.1
1,548,904 - -0.8
1,548,947 - -0.1
1,548,951 + 0.7
1,548,959 + 1.1
1,549,046 - -0.9