Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4998

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4997: 13365 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 1500389 to 1502919 13365 mRNA_4998: 13366 - KOG4169 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases, at 1503499 to 1504533 13366 mRNA_4999: 13367 - Hypothetical Protein, at 1504901 to 1505364 13367

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,502,839 + -1.0
1,502,964 + -1.2
1,503,125 - 0.3
1,503,135 + 0.2
1,503,149 - 1.4
1,503,235 - 0.3
1,503,287 + 1.2
1,503,415 - 1.6
1,503,417 - -0.1
1,503,434 + 1.1
1,503,435 - 0.2
1,503,438 - -0.1
1,503,439 - -1.0
1,503,453 + 1.0
1,503,478 + 0.3
1,503,494 - -0.5
1,503,603 - 13366 mRNA_4998 0.10 -1.8
1,503,621 - 13366 mRNA_4998 0.12 0.9
1,503,748 - 13366 mRNA_4998 0.24 -0.1
1,503,751 + 13366 mRNA_4998 0.24 0.3
1,503,770 + 13366 mRNA_4998 0.26 1.4
1,503,780 + 13366 mRNA_4998 0.27 -0.0
1,503,858 - 13366 mRNA_4998 0.35 -2.7
1,504,034 - 13366 mRNA_4998 0.52 2.0
1,504,056 + 13366 mRNA_4998 0.54 1.4
1,504,182 + 13366 mRNA_4998 0.66 -0.8
1,504,302 + 13366 mRNA_4998 0.78 -0.7
1,504,356 + 13366 mRNA_4998 0.83 1.2
1,504,553 - 1.0
1,504,618 - -0.3
1,505,051 - 13367 mRNA_4999 0.32 0.0
1,505,075 + 13367 mRNA_4999 0.38 -0.1
1,505,363 - -0.3
1,505,377 - 0.5