Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4889

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4888: 13256 - K20044 PICALM phosphatidylinositol-binding clathrin assembly protein, at 1224614 to 1227335 13256 mRNA_4889: 13257 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1227423 to 1230111 13257 mRNA_4890: 13258 - HMMPfam-SH3 domain-PF00018,HMMPfam-Cortical protein marker for cell polarity-PF12768,ProSiteProfiles-Src homology 3 (SH3) domain profile.-PS50002,SMART-Src homology 3 domains-SM00326,SUPERFAMILY--SSF50044,SUPERFAMILY--SSF50965,SUPERFAMILY--SSF69322, at 1230459 to 1234781 13258

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,226,433 - 13256 mRNA_4888 0.67 -0.9
1,226,763 - 13256 mRNA_4888 0.79 0.6
1,227,086 - 0.2
1,227,355 + 0.6
1,227,365 + 3.1
1,227,538 - -2.7
1,227,633 + -0.4
1,227,649 - -0.7
1,227,660 + 0.6
1,227,671 + 0.4
1,227,824 + 13257 mRNA_4889 0.15 -1.8
1,227,830 - 13257 mRNA_4889 0.15 0.4
1,227,839 - 13257 mRNA_4889 0.15 -2.0
1,228,231 + 13257 mRNA_4889 0.30 0.4
1,228,386 - 13257 mRNA_4889 0.36 0.4
1,228,730 - 13257 mRNA_4889 0.49 -0.7
1,229,286 + 13257 mRNA_4889 0.69 1.0
1,229,471 - 13257 mRNA_4889 0.76 -1.9
1,229,970 - 0.3
1,230,018 - -1.5
1,230,157 - 0.1
1,230,160 - -2.3
1,230,168 + 1.3
1,230,168 + 3.3
1,230,187 + -0.8
1,230,190 - -0.1
1,230,462 - -0.5
1,230,641 - -0.4
1,230,655 + -0.1