Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4718

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4717: 13085 - BLAST putative proteasome regulatory subunit 12 [Rhizoctoni..., at 844086 to 846101 13085 mRNA_4718: 13086 - HMMPfam-Thaumatin family-PF00314,PRINTS-Pathogenesis-related protein signature-PR00347,ProSitePatterns-Thaumatin family signature.-PS00316,ProSiteProfiles-Thaumatin family profile.-PS51367,SMART-Thaumatin family-SM00205,SUPERFAMILY--SSF49870, at 846943 to 849026 13086 mRNA_4719: 13087 - K18693 DPP1 diacylglycerol diphosphate phosphatase / phosphatidate phosphatase, at 849310 to 850936 13087

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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846,034 + 1.0
846,037 - 1.8
846,048 + -0.6
846,250 - 0.3
846,365 - -0.7
846,479 - -0.1
846,495 + -1.3
846,513 + 0.3
846,598 - -0.0
846,617 + 3.1
846,627 - 0.1
846,630 - -0.7
846,645 + 0.1
846,649 + 0.5
846,660 + 0.4
846,782 - 0.5
846,785 - 1.1
846,794 - 0.3
846,812 - -1.6
846,919 - 1.2
847,070 - 0.4
847,094 - 1.2
847,485 + 13086 mRNA_4718 0.26 -0.4
847,488 - 13086 mRNA_4718 0.26 1.2
847,497 + 13086 mRNA_4718 0.27 -2.5
847,916 - 13086 mRNA_4718 0.47 1.1
848,048 + 13086 mRNA_4718 0.53 -0.0
848,155 - 13086 mRNA_4718 0.58 1.5
848,239 + 13086 mRNA_4718 0.62 0.0
848,387 + 13086 mRNA_4718 0.69 -1.3
848,394 - 13086 mRNA_4718 0.70 1.4
848,397 - 13086 mRNA_4718 0.70 0.1
848,954 - -0.5
848,954 - -0.9
849,097 - -0.4
849,256 - 0.6
849,260 + 0.2
849,275 + -0.1
849,279 - 0.9
849,280 - 0.7
849,367 + 1.1
849,381 + -1.3
849,401 - 1.2
849,404 - -0.4
849,431 - 1.9
849,434 + -0.8
849,570 - 13087 mRNA_4719 0.16 -0.2
849,598 + 13087 mRNA_4719 0.18 0.4
849,621 + 13087 mRNA_4719 0.19 -0.3
849,702 - 13087 mRNA_4719 0.24 -0.2
849,743 - 13087 mRNA_4719 0.27 1.6
849,802 + 13087 mRNA_4719 0.30 0.7
849,822 - 13087 mRNA_4719 0.31 -0.9
849,826 + 13087 mRNA_4719 0.32 -0.2
850,012 + 13087 mRNA_4719 0.43 -1.5