Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4711

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824184 to 826218 13078 mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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825,858 - 13078 mRNA_4710 0.82 -0.8
825,987 - 13078 mRNA_4710 0.89 1.2
826,022 - 2.2
826,244 - 0.8
826,246 - 1.3
826,247 - 0.3
826,256 - -0.5
826,268 - -0.8
826,277 - 0.0
826,289 - -0.0
826,289 - -0.8
826,290 + 0.0
826,295 + -0.5
826,306 - -0.1
826,314 + 0.0
826,470 - 1.0
826,491 + -0.0
826,584 - -0.0
826,686 + 1.3
826,728 + -0.2
826,885 + 1.7
827,503 + 13079 mRNA_4711 0.23 -2.0
827,874 + 13079 mRNA_4711 0.32 -0.3
828,990 - 13079 mRNA_4711 0.59 1.0
829,030 - 13079 mRNA_4711 0.59 -1.6
829,129 - 13079 mRNA_4711 0.62 -0.4
829,168 + 13079 mRNA_4711 0.63 0.4
829,358 - 13079 mRNA_4711 0.67 0.1
829,373 - 13079 mRNA_4711 0.68 -0.8
829,476 + 13079 mRNA_4711 0.70 -0.4
829,606 - 13079 mRNA_4711 0.73 1.8
829,619 - 13079 mRNA_4711 0.74 0.4
829,635 + 13079 mRNA_4711 0.74 -0.4
829,970 - 13079 mRNA_4711 0.82 0.6
830,076 + 13079 mRNA_4711 0.85 -3.1
830,162 + 13079 mRNA_4711 0.87 -2.6
830,411 - -0.7
830,518 - -2.0
830,525 + -2.7
830,527 - -0.7
830,644 + 1.1
830,794 + 0.6
830,943 - 0.1
831,409 + 13080 mRNA_4712 0.15 -0.2
831,521 - 13080 mRNA_4712 0.18 0.8
831,703 - 13080 mRNA_4712 0.24 -0.3