Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4603

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4602: 12970 - HMMPfam-NYN domain-PF01936, at 561866 to 562949 12970 mRNA_4603: 12971 - K07119 K07119 uncharacterized protein, at 563356 to 565108 12971 mRNA_4604: 12972 - K10747 LIG1 DNA ligase 1, at 565709 to 567987 12972

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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562,571 - 12970 mRNA_4602 0.65 -0.2
562,709 + 12970 mRNA_4602 0.78 1.0
562,733 + 12970 mRNA_4602 0.80 -0.4
562,831 + 12970 mRNA_4602 0.89 0.3
562,857 + -2.2
562,865 + -1.0
562,870 + 2.4
562,871 + -0.5
563,143 - 0.7
563,151 + 0.7
563,160 + -0.5
563,180 + 0.2
563,326 - -0.2
563,464 - 0.2
564,002 + 12971 mRNA_4603 0.37 1.6
564,033 + 12971 mRNA_4603 0.39 1.7
564,050 + 12971 mRNA_4603 0.40 0.3
564,182 + 12971 mRNA_4603 0.47 1.2
564,195 + 12971 mRNA_4603 0.48 2.1
564,624 - 12971 mRNA_4603 0.72 0.9
564,626 - 12971 mRNA_4603 0.72 1.3
564,635 + 12971 mRNA_4603 0.73 -0.3
564,751 - 12971 mRNA_4603 0.80 0.1
564,871 + 12971 mRNA_4603 0.86 -0.6
564,925 + 12971 mRNA_4603 0.90 -0.6
564,925 + 12971 mRNA_4603 0.90 -1.4
565,045 - -2.3
565,049 + -1.2
565,054 - -0.4
565,063 + -0.3
565,196 - -1.1
565,197 - -0.3
565,232 + 0.5
565,250 + -0.2
565,255 + 0.3
565,276 - 1.8
565,282 + 0.8
565,285 + -1.4
565,288 - 0.8
565,298 + -0.4
565,315 + -1.1
565,324 + -0.7
565,329 + 0.7
565,334 - 0.3
565,337 - 1.9
565,362 + 0.6
565,371 + 0.1
565,373 - -0.3
565,377 - 0.6
565,396 + 1.4
565,405 - 1.6
565,466 - 0.2
565,473 + -1.0
565,481 - -0.7
565,482 - 0.6
565,487 + 0.5
565,491 - -1.6
565,502 - -1.5
565,504 - 1.0
565,506 + 0.1
565,508 - -0.9
565,513 + -0.5
565,518 + 0.1
565,522 + -3.6
565,528 + -0.0
565,534 + 1.5
565,535 - -0.5
565,541 - 0.1
565,549 + -0.2
565,551 - 0.2
565,555 + 1.2
565,592 - 0.2
565,600 + 0.4
565,600 - 0.4
565,603 - -0.9
565,615 - -0.6
565,617 + 0.6
565,641 + 0.2
565,644 + 2.6
565,728 + 1.6
565,755 + -1.2