Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4569

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4568: 12936 - Hypothetical Protein, at 485805 to 489325 12936 mRNA_4569: 12937 - HMMPfam-Integral peroxisomal membrane peroxin-PF06398, at 489481 to 490955 12937 mRNA_4570: 12938 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 491173 to 492372 12938

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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488,525 + 12936 mRNA_4568 0.77 1.3
488,662 + 12936 mRNA_4568 0.81 1.0
488,954 - 12936 mRNA_4568 0.89 -0.0
489,115 + 1.1
489,246 - -0.4
489,812 + 12937 mRNA_4569 0.22 0.9
490,963 - 0.1
490,972 + -2.6
490,976 + 0.4
490,980 + 2.2
490,983 - -0.2
490,990 + 0.6
491,029 + 0.0
491,030 - -0.0
491,040 + 1.3
491,041 - 0.4
491,133 - -0.1
491,145 + 1.9
491,150 - -1.3
491,181 + -0.5
491,193 + 0.6
491,199 - 2.9
491,280 + 0.5
491,314 + 12938 mRNA_4570 0.12 -0.3
491,318 - 12938 mRNA_4570 0.12 -0.7
491,442 - 12938 mRNA_4570 0.22 -2.7
491,453 - 12938 mRNA_4570 0.23 -0.1
491,542 - 12938 mRNA_4570 0.31 -0.2
491,568 - 12938 mRNA_4570 0.33 -0.4
491,807 - 12938 mRNA_4570 0.53 -0.1
491,824 + 12938 mRNA_4570 0.54 1.1