Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4562

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4561: 12929 - K06990 MEMO1 MEMO1 family protein, at 464488 to 466003 12929 mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466499 to 468748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469300 to 472637 12931

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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465,712 - 12929 mRNA_4561 0.81 2.2
465,742 + 12929 mRNA_4561 0.83 -1.3
465,894 - -0.5
465,996 + -0.2
465,996 + -2.0
466,006 - 0.8
466,021 + 0.5
466,157 - 0.0
466,174 + 2.2
466,178 - 1.3
466,183 + -0.0
466,324 - -0.6
466,325 + -1.4
466,332 - -1.0
466,333 + -2.2
466,333 + -1.6
466,473 + -1.2
466,473 + -0.7
466,480 - 1.6
466,490 - 0.0
466,770 + 12930 mRNA_4562 0.12 1.7
466,783 + 12930 mRNA_4562 0.13 -0.5
466,928 + 12930 mRNA_4562 0.19 -0.1
466,930 - 12930 mRNA_4562 0.19 -0.4
466,932 - 12930 mRNA_4562 0.19 -0.2
467,110 - 12930 mRNA_4562 0.27 -1.2
467,237 - 12930 mRNA_4562 0.33 1.4
467,357 - 12930 mRNA_4562 0.38 -0.7
468,511 + 12930 mRNA_4562 0.89 -0.3
468,546 - 0.2
468,565 + 0.7
468,592 - -1.2
468,874 - 1.8
469,604 - -1.3