Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4501

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4500: 12868 - K14304 NUP85 nuclear pore complex protein Nup85, at 327724 to 330564 12868 mRNA_4501: 12869 - Hypothetical Protein, at 330737 to 332545 12869 mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332888 to 334792 12870

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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329,780 - 12868 mRNA_4500 0.72 0.0
329,795 - 12868 mRNA_4500 0.73 0.6
330,197 - 12868 mRNA_4500 0.87 1.0
330,361 + 1.0
330,364 - -0.2
330,476 - -0.2
330,512 + -0.9
330,523 + 0.2
330,644 + 1.0
330,655 - -0.9
330,674 + -0.5
331,045 + 12869 mRNA_4501 0.17 1.0
331,223 - 12869 mRNA_4501 0.27 1.3
331,664 - 12869 mRNA_4501 0.51 0.6
331,768 - 12869 mRNA_4501 0.57 -0.3
331,787 + 12869 mRNA_4501 0.58 0.3
331,792 - 12869 mRNA_4501 0.58 1.8
332,032 + 12869 mRNA_4501 0.72 -0.6
332,078 - 12869 mRNA_4501 0.74 0.8
332,090 + 12869 mRNA_4501 0.75 2.6
332,400 + 0.2
332,417 + -1.2
332,537 - 0.0
332,894 - -0.3
333,124 - 12870 mRNA_4502 0.12 1.2
333,317 - 12870 mRNA_4502 0.23 -1.7
333,459 - 12870 mRNA_4502 0.30 -0.1