Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4457

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4456: 12824 - BLAST C-x8-C-x5-C-x3-H type zinc finger protein [Nanniz..., at 228673 to 230476 12824 mRNA_4457: 12825 - K14709 SLC39A1_2_3, ZIP1_2_3 solute carrier family 39 (zinc transporter), member 1/2/3, at 231158 to 232825 12825 mRNA_4458: 12826 - K08762 DBI, ACBP diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein), at 233111 to 233901 12826

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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230,217 + 12824 mRNA_4456 0.86 -0.4
230,227 + 12824 mRNA_4456 0.86 0.3
230,485 - 0.3
230,501 + 0.7
230,512 - 0.1
230,533 - -0.2
230,621 + 1.0
230,627 - 0.3
230,742 - -0.7
230,767 - -0.8
230,769 - 0.1
230,769 + 0.1
230,873 + 0.1
230,881 + -2.9
230,881 - -0.2
230,881 + -0.9
230,889 - 0.4
230,897 - 0.2
230,910 + -0.2
230,919 - -0.7
230,920 - -0.4
230,956 - 1.2
230,966 - -0.0
230,966 + 0.6
230,970 - 0.5
230,974 - -0.9
230,982 - 0.3
230,995 - -0.3
231,009 - -0.1
231,012 - 0.3
231,031 + 1.5
231,061 + -3.4
231,275 + 1.9
231,402 + 12825 mRNA_4457 0.15 0.1
231,865 - 12825 mRNA_4457 0.42 -0.3
232,098 - 12825 mRNA_4457 0.56 -1.5
232,222 - 12825 mRNA_4457 0.64 -0.0
232,445 - 12825 mRNA_4457 0.77 -0.5
232,698 + 0.7
232,828 + -0.6
232,855 + 1.7
232,960 + -0.5
233,103 - -0.5