Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4434

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4433: 12801 - Hypothetical Protein, at 173129 to 173293 12801 mRNA_4434: 12802 - Hypothetical Protein, at 173959 to 175087 12802 mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175416 to 177921 12803

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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173,001 + 0.3
173,006 - 0.1
173,007 + 0.8
173,044 + 2.7
173,216 - 12801 mRNA_4433 0.53 0.3
173,483 - -0.7
173,513 - -0.7
173,641 - 1.6
173,749 + -0.0
173,901 - -2.3
173,906 - 0.5
174,054 + -0.2
174,057 + 1.9
174,081 - 12802 mRNA_4434 0.11 1.1
174,117 + 12802 mRNA_4434 0.14 -0.3
174,220 - 12802 mRNA_4434 0.23 -1.1
174,228 + 12802 mRNA_4434 0.24 -0.7
174,355 - 12802 mRNA_4434 0.35 1.2
174,362 + 12802 mRNA_4434 0.36 0.2
174,368 + 12802 mRNA_4434 0.36 2.4
174,411 + 12802 mRNA_4434 0.40 2.4
174,412 + 12802 mRNA_4434 0.40 0.2
174,703 + 12802 mRNA_4434 0.66 0.8
174,773 - 12802 mRNA_4434 0.72 0.9
174,907 - 12802 mRNA_4434 0.84 0.7
174,915 + 12802 mRNA_4434 0.85 -2.6
174,941 - 12802 mRNA_4434 0.87 -0.1
174,947 + 12802 mRNA_4434 0.88 1.0
175,090 + 0.5
175,090 - -1.3
175,218 + 0.0
175,223 + 2.1
175,390 + -0.2
175,485 + 0.1
175,544 - -0.2
175,554 + -1.1
175,667 - 12803 mRNA_4435 0.10 0.3
175,815 + 12803 mRNA_4435 0.16 -0.1
175,945 + 12803 mRNA_4435 0.21 -0.9