Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4256

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4255: 12623 - HMMPfam-Dioxygenase-PF00775,SUPERFAMILY--SSF49482, at 1721312 to 1723112 12623 mRNA_4256: 12624 - HMMPfam-Putative serine esterase (DUF676)-PF05057,SUPERFAMILY--SSF53474, at 1723590 to 1725479 12624 mRNA_4257: 12625 - K00295 MTD1 methylenetetrahydrofolate dehydrogenase (NAD+), at 1725575 to 1726851 12625

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,722,840 - 12623 mRNA_4255 0.85 0.2
1,722,852 - 12623 mRNA_4255 0.86 -1.8
1,722,876 - 12623 mRNA_4255 0.87 0.7
1,723,052 + 0.2
1,723,129 + 0.2
1,723,309 - -0.1
1,723,313 - 0.4
1,723,319 + -0.1
1,723,434 - 0.5
1,723,452 + 0.5
1,723,457 + 1.9
1,723,464 - -0.4
1,723,474 - 0.2
1,723,474 + 0.2
1,723,481 + -0.5
1,723,732 - 1.1
1,723,734 - 0.8
1,723,741 + -1.3
1,723,746 - 0.5
1,723,750 - -0.4
1,723,771 + 0.4
1,724,021 - 12624 mRNA_4256 0.23 -0.7
1,724,039 + 12624 mRNA_4256 0.24 2.0
1,724,307 + 12624 mRNA_4256 0.38 0.7
1,724,312 + 12624 mRNA_4256 0.38 1.7
1,724,598 - 12624 mRNA_4256 0.53 1.5
1,724,600 + 12624 mRNA_4256 0.53 -0.6
1,724,615 - 12624 mRNA_4256 0.54 -0.9
1,724,637 - 12624 mRNA_4256 0.55 -0.3
1,724,909 + 12624 mRNA_4256 0.70 0.3
1,725,056 + 12624 mRNA_4256 0.78 -0.9
1,725,067 + 12624 mRNA_4256 0.78 0.7
1,725,170 - 12624 mRNA_4256 0.84 0.3
1,725,181 + 12624 mRNA_4256 0.84 1.9
1,725,486 + 0.8
1,725,588 - -0.3
1,725,615 + -0.1
1,725,745 - 12625 mRNA_4257 0.13 0.9
1,726,011 + 12625 mRNA_4257 0.34 -1.7
1,726,324 - 12625 mRNA_4257 0.59 -0.4
1,726,328 + 12625 mRNA_4257 0.59 -0.8
1,726,358 - 12625 mRNA_4257 0.61 -0.3