Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4212

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4211: 12579 - Hypothetical Protein, at 1622119 to 1623170 12579 mRNA_4212: 12580 - KOG1968 Replication factor C, subunit RFC1 (large subunit), at 1623456 to 1625668 12580 mRNA_4213: 12581 - K01673 cynT, can carbonic anhydrase, at 1625802 to 1627146 12581

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,622,829 - 12579 mRNA_4211 0.67 0.9
1,622,830 + 12579 mRNA_4211 0.68 -0.2
1,623,165 + 1.6
1,623,258 - 1.2
1,623,386 + 0.1
1,623,442 + -0.1
1,623,491 - 2.0
1,623,648 - 0.2
1,624,117 + 12580 mRNA_4212 0.30 -1.6
1,624,127 - 12580 mRNA_4212 0.30 -2.0
1,624,278 - 12580 mRNA_4212 0.37 1.1
1,624,597 + 12580 mRNA_4212 0.52 0.7
1,624,736 - 12580 mRNA_4212 0.58 0.4
1,624,977 - 12580 mRNA_4212 0.69 -1.3
1,624,997 + 12580 mRNA_4212 0.70 0.6
1,625,152 + 12580 mRNA_4212 0.77 -1.8
1,625,153 - 12580 mRNA_4212 0.77 -1.8
1,625,154 - 12580 mRNA_4212 0.77 1.9
1,625,154 - 12580 mRNA_4212 0.77 0.2
1,625,154 - 12580 mRNA_4212 0.77 -0.5
1,625,268 - 12580 mRNA_4212 0.82 0.9
1,625,295 - 12580 mRNA_4212 0.83 -0.6
1,625,421 - 12580 mRNA_4212 0.89 0.1
1,625,571 - 0.3
1,625,581 - 0.0
1,625,591 + 0.2
1,625,597 + -0.3
1,625,597 + 1.2
1,626,152 - 12581 mRNA_4213 0.26 -0.3