Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4165

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4164: 12532 - K02021 ABC.MR putative ABC transport system ATP-binding protein, at 1511500 to 1513697 12532 mRNA_4165: 12533 - Hypothetical Protein, at 1513991 to 1515479 12533 mRNA_4166: 12534 - K12597 AIR1_2 protein AIR1/2, at 1515878 to 1517607 12534

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,513,068 - 12532 mRNA_4164 0.71 3.0
1,513,387 + 12532 mRNA_4164 0.86 -2.4
1,513,461 - 12532 mRNA_4164 0.89 0.9
1,513,816 - 0.2
1,513,844 - -1.6
1,513,844 + 0.3
1,514,000 + -0.1
1,514,165 + 12533 mRNA_4165 0.12 -1.4
1,514,292 + 12533 mRNA_4165 0.20 0.4
1,514,343 + 12533 mRNA_4165 0.24 -0.8
1,514,594 + 12533 mRNA_4165 0.40 0.7
1,514,727 - 12533 mRNA_4165 0.49 -0.2
1,514,731 - 12533 mRNA_4165 0.50 0.3
1,515,006 - 12533 mRNA_4165 0.68 -0.3
1,515,020 + 12533 mRNA_4165 0.69 1.3
1,515,030 - 12533 mRNA_4165 0.70 0.4
1,515,274 - 12533 mRNA_4165 0.86 -0.3
1,515,310 + 12533 mRNA_4165 0.89 0.8
1,515,318 + 12533 mRNA_4165 0.89 -0.4
1,515,321 + 12533 mRNA_4165 0.89 -1.1
1,515,332 + 0.6
1,515,464 - -1.4
1,515,467 + -0.3
1,515,481 + 0.1
1,515,485 + -1.1
1,515,604 - -0.8
1,515,612 - 0.5
1,515,622 + -0.9
1,515,631 + -1.5
1,515,634 + -0.4
1,515,641 - 0.4
1,515,734 - 0.0
1,515,738 - 0.3
1,515,748 + 1.7
1,515,756 - -0.6
1,515,758 + -0.5
1,515,879 - -1.3
1,515,897 - 0.4
1,515,910 - 1.7
1,515,912 + -0.3
1,515,925 + -2.8
1,515,925 + 0.5
1,515,925 + -1.0
1,516,060 + 12534 mRNA_4166 0.11 -0.8
1,516,063 + 12534 mRNA_4166 0.11 1.2
1,516,090 + 12534 mRNA_4166 0.12 0.7