Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4131

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4130: 12498 - K14812 NGL2 RNA exonuclease NGL2, at 1419173 to 1421594 12498 mRNA_4131: 12499 - KOG3783 Uncharacterized conserved protein, at 1421830 to 1424236 12499

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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1,421,134 - 12498 mRNA_4130 0.81 -0.5
1,421,360 - -1.1
1,421,364 - 0.6
1,421,401 - -1.8
1,421,407 + 1.2
1,421,521 + 0.7
1,421,528 + -0.4
1,421,533 - -0.0
1,421,678 - 0.4
1,421,689 + 0.4
1,421,713 + -0.9
1,421,953 + -0.1
1,422,385 - 12499 mRNA_4131 0.23 -2.0
1,422,385 - 12499 mRNA_4131 0.23 -1.2
1,422,386 + 12499 mRNA_4131 0.23 0.2
1,422,389 + 12499 mRNA_4131 0.23 -0.6
1,422,396 + 12499 mRNA_4131 0.24 -2.1
1,422,826 - 12499 mRNA_4131 0.41 -0.9
1,422,834 - 12499 mRNA_4131 0.42 0.4
1,422,996 - 12499 mRNA_4131 0.48 0.8
1,423,281 - 12499 mRNA_4131 0.60 0.7
1,423,418 - 12499 mRNA_4131 0.66 -0.1
1,423,717 + 12499 mRNA_4131 0.78 0.1
1,423,890 - 12499 mRNA_4131 0.86 -0.2
1,423,989 - 12499 mRNA_4131 0.90 -1.7
1,424,147 + -0.2
1,424,154 + 0.9
1,424,167 + -1.4
1,424,168 - -0.1
1,424,183 + 0.6
1,424,591 - -1.7
1,424,730 + 0.6
1,424,756 + 0.4
1,424,882 + 0.1
1,424,911 - 0.6
1,425,019 + -0.1
1,425,034 + -1.9
1,425,045 + -2.5
1,425,048 - -1.0
1,425,048 - 0.0
1,425,050 + -0.4
1,425,063 + 0.8
1,425,064 + 3.1
1,425,091 + 0.5
1,425,095 - 0.7
1,425,104 - 0.9
1,425,109 - -0.4
1,425,110 - 0.3
1,425,113 + 0.3
1,425,118 + 1.5
1,425,127 + -0.7
1,425,130 + 0.0
1,425,136 - -0.3
1,425,139 + 2.6