Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3912

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3911: 12279 - K18655 DDX19, DBP5 ATP-dependent RNA helicase DDX19/DBP5, at 878883 to 880998 12279 mRNA_3912: 12280 - HMMPfam-Protein of unknown function (DUF2422)-PF10337, at 881146 to 884820 12280 mRNA_3913: 12281 - SUPERFAMILY--SSF48452, at 885030 to 886525 12281

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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881,039 + 0.1
881,041 + 0.0
881,041 + -0.3
881,050 + -0.0
881,061 + 2.4
881,068 + -1.3
881,192 - 2.3
881,195 + 1.6
881,226 + 0.9
881,507 + -0.2
881,508 - -1.8
881,627 - 12280 mRNA_3912 0.13 0.4
881,921 + 12280 mRNA_3912 0.21 -1.3
882,077 - 12280 mRNA_3912 0.25 -0.2
883,041 - 12280 mRNA_3912 0.52 2.1
883,667 + 12280 mRNA_3912 0.69 -0.6
884,371 - 12280 mRNA_3912 0.88 -0.3
884,406 - 12280 mRNA_3912 0.89 0.6
884,443 + 12280 mRNA_3912 0.90 -0.4
884,528 - 0.2
884,564 - -1.5
884,840 - 0.4
884,860 + 1.1
884,957 - -2.0
884,958 - -0.5