Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3904

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857570 to 859111 12271 mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859161 to 861426 12272 mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862046 to 863996 12273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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858,266 - 12271 mRNA_3903 0.45 0.4
858,291 + 12271 mRNA_3903 0.47 0.2
858,294 - 12271 mRNA_3903 0.47 1.3
858,744 + 12271 mRNA_3903 0.76 -0.7
858,795 + 12271 mRNA_3903 0.79 -0.5
859,010 + 1.3
859,262 - -0.3
859,540 - 12272 mRNA_3904 0.17 0.0
859,617 + 12272 mRNA_3904 0.20 -2.4
859,736 - 12272 mRNA_3904 0.25 1.7
859,751 - 12272 mRNA_3904 0.26 -1.1
859,759 + 12272 mRNA_3904 0.26 0.1
860,077 - 12272 mRNA_3904 0.40 -0.2
860,186 - 12272 mRNA_3904 0.45 3.3
860,318 + 12272 mRNA_3904 0.51 1.0
860,630 - 12272 mRNA_3904 0.65 1.7
860,745 - 12272 mRNA_3904 0.70 -0.4
860,889 + 12272 mRNA_3904 0.76 -0.4
860,954 + 12272 mRNA_3904 0.79 0.3
860,963 + 12272 mRNA_3904 0.80 -0.5
861,071 - 12272 mRNA_3904 0.84 -3.0
861,499 - 0.9
861,702 + -0.7
862,112 - -3.8
862,377 + 12273 mRNA_3905 0.17 1.5