Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3885

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3885: 12253 - K00773 tgt, QTRT1 queuine tRNA-ribosyltransferase, at 822787 to 823648 12253 mRNA_3886: 12254 - K14298 RAE1, GLE2 mRNA export factor, at 823913 to 825750 12254

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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821,791 - 0.8
821,794 - 0.1
821,803 - -1.3
821,809 + 1.2
821,811 - 0.7
821,811 - -0.1
821,814 - -0.6
821,822 - -2.8
821,835 - 0.4
821,836 + 0.1
821,841 - 1.8
821,845 + 0.5
821,849 - -0.2
821,857 - 1.2
821,866 - 1.5
821,875 - 0.3
821,876 + -1.8
821,880 - 1.7
821,881 + -1.1
821,884 + -1.4
821,896 + -0.6
821,898 - 1.3
821,899 - 0.3
821,900 - -1.6
821,902 - -0.5
821,903 + 0.2
821,907 - -0.3
821,910 - -1.9
821,910 + 0.2
821,916 - 0.1
821,918 + -2.9
821,924 - 0.0
821,925 - -0.4
821,926 + -0.2
821,931 - -1.1
821,931 + -0.9
821,935 - 2.2
821,939 - -0.5
821,940 + 1.2
821,951 - 0.0
821,954 + -1.0
821,955 - 1.2
821,962 + 0.2
821,964 - 0.1
821,967 - -0.5
821,967 + 0.5
821,970 + -0.1
821,976 + 0.9
821,988 - 1.1
821,989 + 0.8
821,999 + 0.8
821,999 - 2.2
822,026 + -1.7
822,028 - -0.7
822,042 + 0.1
822,048 + 0.1
822,061 + 0.3
822,063 - -0.7
822,068 + 0.1
822,069 + 0.8
822,071 - -0.5
822,072 - -0.6
822,079 - -2.2
822,082 - 0.6
822,082 + 0.8
822,083 - -0.6
822,084 - 1.2
822,086 - 0.7
822,087 + -0.4
822,094 + 0.3
822,097 - 1.9
822,105 + 0.6
822,105 + 0.3
822,115 - 0.4
822,117 + 1.7
822,119 - -0.9
822,127 + 0.7
822,155 + 0.4
822,159 + 0.3
822,166 - 0.1
822,187 - 0.8
822,192 + 1.1
822,197 + 0.1
822,197 - 1.9
822,213 - 0.3
822,220 + -0.2
822,224 - 1.6
822,229 + -1.1
822,246 - -0.6
822,247 - -1.8
822,257 - 1.2
822,257 - 0.3
822,260 + -0.7
822,262 - -0.2
822,265 - 0.3
822,266 + 0.8
822,290 + -1.2
822,299 - -0.0
822,300 - 0.4
822,305 - 1.2
822,311 - 0.2
822,313 + 0.4
822,314 + 1.0
822,320 + -1.9
822,325 - 0.5
822,325 - -0.7
822,330 + -0.3
822,370 - 1.9
822,374 - 2.1
822,376 + -0.5
822,384 + 0.8
822,392 - 0.4
822,400 + -0.4
822,407 - 1.3
822,413 + 2.3
822,445 + 0.6
822,457 - 0.8
822,462 + 1.7
822,470 - 0.0
822,473 + -1.6
822,484 + 0.8
822,485 - 0.7
822,485 - -1.7
822,486 + 0.2
822,495 + -0.6
822,495 - 0.8
822,515 - -0.2
822,530 - 0.5
822,531 - -0.7
822,532 + -0.1
822,534 + -0.1
822,545 + 2.1
822,554 - -0.5
822,559 + -0.5
822,559 - -0.4
822,563 + -0.0
822,569 - 2.6
822,588 + -0.3
822,591 + -0.6
822,600 + 1.1
822,611 + 0.8
822,613 + -0.9
822,614 - 0.2
822,621 - 3.3
822,621 - 1.8
822,621 - -0.5
822,624 + -0.7
822,631 - -0.5
822,638 + 0.2
822,640 - 0.1
822,657 - 1.6
822,676 + 0.3
822,757 + 0.6
822,784 - -0.3
822,787 + -1.2
822,787 - 0.9
823,082 + 12253 mRNA_3885 0.34 -1.2
823,096 + 12253 mRNA_3885 0.36 0.5
823,237 + 12253 mRNA_3885 0.52 -0.4
823,241 + 12253 mRNA_3885 0.53 -1.9
823,309 + 12253 mRNA_3885 0.61 -0.0
823,551 + 12253 mRNA_3885 0.89 0.6
823,699 - -1.1
824,026 - -0.8
824,306 - 12254 mRNA_3886 0.21 -2.3
824,402 + 12254 mRNA_3886 0.27 0.1
824,405 - 12254 mRNA_3886 0.27 0.2
824,421 - 12254 mRNA_3886 0.28 -0.2