Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3881

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3880: 12248 - K00262 E1.4.1.4, gdhA glutamate dehydrogenase (NADP+), at 812217 to 813988 12248 mRNA_3881: 12249 - Hypothetical Protein, at 814368 to 814862 12249 mRNA_3882: 12250 - Hypothetical Protein, at 815200 to 816864 12250

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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813,371 - 12248 mRNA_3880 0.65 2.2
813,668 + 12248 mRNA_3880 0.82 -0.4
813,906 - -1.9
813,937 + -0.5
814,071 + 1.2
814,073 + 0.9
814,079 - 0.7
814,086 - 1.5
814,086 - 0.9
814,093 - -0.4
814,094 + 0.5
814,095 + -0.7
814,098 - 0.6
814,110 - 0.3
814,113 + -0.1
814,119 - 0.3
814,121 + 0.5
814,128 + 0.0
814,137 - 0.2
814,138 - 0.1
814,144 + -0.0
814,152 - 0.3
814,154 - -2.5
814,162 + 0.1
814,162 - 2.7
814,171 - -1.5
814,189 - -0.0
814,197 + -0.3
814,304 + 0.2
814,305 - -2.7
814,316 + 1.5
814,317 - 0.5
814,320 - -0.1
814,333 + 0.1
814,334 + -0.6
814,356 + -0.3
814,386 - -1.2
814,398 - 1.2
814,402 - 0.1
814,405 + 2.4
814,421 - 12249 mRNA_3881 0.11 -0.4
814,422 + 12249 mRNA_3881 0.11 -2.4
814,472 - 12249 mRNA_3881 0.21 0.5
814,477 + 12249 mRNA_3881 0.22 0.9
814,478 - 12249 mRNA_3881 0.22 -0.7
814,492 - 12249 mRNA_3881 0.25 0.6
814,492 + 12249 mRNA_3881 0.25 -0.8
814,499 + 12249 mRNA_3881 0.26 1.7
814,506 - 12249 mRNA_3881 0.28 1.7
814,529 - 12249 mRNA_3881 0.33 -0.1
814,539 + 12249 mRNA_3881 0.35 0.9
814,582 - 12249 mRNA_3881 0.43 -0.1
814,651 - 12249 mRNA_3881 0.57 2.2
814,799 - 12249 mRNA_3881 0.87 1.6
814,806 - 12249 mRNA_3881 0.88 -1.2
814,806 - 12249 mRNA_3881 0.88 -0.1
814,942 + 0.5
814,943 - 0.3
814,951 - 1.6
814,973 + 0.1
815,124 - -0.1
815,731 + 12250 mRNA_3882 0.32 1.3
815,856 + 12250 mRNA_3882 0.39 -1.2