Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3811

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3810: 12178 - K12869 CRN, CRNKL1, CLF1, SYF3 crooked neck, at 632455 to 635215 12178 mRNA_3811: 12179 - Hypothetical Protein, at 635575 to 638591 12179 mRNA_3812: 12180 - HMMPfam-MYND finger-PF01753,SUPERFAMILY--SSF144232, at 638841 to 639831 12180

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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635,265 + 0.0
635,521 + 0.9
635,530 - 0.8
635,534 - -2.9
635,557 - -1.7
635,604 - -0.0
635,613 + 0.4
635,634 + 0.3
635,638 + 1.4
635,644 + -1.1
635,757 - -0.7
635,761 - -1.3
635,761 + -0.1
635,765 - -0.4
635,776 + 0.1
635,779 + 0.3
635,918 - 12179 mRNA_3811 0.11 0.5
635,927 - 12179 mRNA_3811 0.12 0.1
635,927 + 12179 mRNA_3811 0.12 0.0
636,092 - 12179 mRNA_3811 0.17 0.0
636,092 - 12179 mRNA_3811 0.17 -2.0
636,095 + 12179 mRNA_3811 0.17 -2.0
636,095 + 12179 mRNA_3811 0.17 -1.2
636,231 - 12179 mRNA_3811 0.22 -0.3
636,550 + 12179 mRNA_3811 0.32 -1.1
636,714 + 12179 mRNA_3811 0.38 -0.7
636,807 - 12179 mRNA_3811 0.41 -1.6
637,165 + 12179 mRNA_3811 0.53 -1.3
637,192 + 12179 mRNA_3811 0.54 0.9
637,377 + 12179 mRNA_3811 0.60 -0.5
637,461 + 12179 mRNA_3811 0.63 -2.3
637,585 - 12179 mRNA_3811 0.67 -2.1
637,776 - 12179 mRNA_3811 0.73 0.1
638,387 - -0.2
638,548 + -1.1
638,683 - -0.8
638,708 - -0.2
638,723 - 0.2
638,732 + 0.5
638,752 + -1.0
638,810 - 1.2
639,118 + 12180 mRNA_3812 0.28 0.5
639,312 - 12180 mRNA_3812 0.48 0.8
639,452 + 12180 mRNA_3812 0.62 -0.2
639,578 + 12180 mRNA_3812 0.74 -0.2