Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3741

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3739: 12107 - HMMPfam-Rare lipoprotein A (RlpA)-like double-psi beta-barrel-PF03330,ProSiteProfiles-Expansin, family-45 endoglucanase-like domain profile.-PS50842,SUPERFAMILY--SSF50685, at 468433 to 469585 12107 mRNA_3740: 12108 - Hypothetical Protein, at 469899 to 470347 12108 mRNA_3741: 12109 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 470340 to 473925 12109 mRNA_3742: 12110 - SMART-Parallel beta-helix repeats-SM00710,SUPERFAMILY--SSF51126, at 474492 to 476469 12110

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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469,543 + -0.3
469,589 - -0.1
469,597 + 1.2
469,652 + -0.3
469,722 + -0.4
469,724 - 1.0
469,742 + 1.3
469,742 + -1.1
469,742 + -0.3
469,753 + 0.6
469,823 + -0.7
469,825 + -0.4
469,849 - 0.9
469,877 + 1.2
469,878 + 0.1
469,881 - 0.0
469,881 - 0.6
469,892 + 0.5
469,895 + -0.4
469,897 + -0.0
469,939 + -0.6
469,962 - 12108 mRNA_3740 0.14 -0.0
469,963 - 12108 mRNA_3740 0.14 -0.6
469,963 - 12108 mRNA_3740 0.14 -1.4
469,965 + 12108 mRNA_3740 0.15 -0.0
469,965 - 12108 mRNA_3740 0.15 0.2
469,967 - 12108 mRNA_3740 0.15 -0.7
469,968 + 12108 mRNA_3740 0.15 -0.3
469,968 - 12108 mRNA_3740 0.15 0.4
469,970 + 12108 mRNA_3740 0.16 0.5
469,984 - 12108 mRNA_3740 0.19 -0.1
469,998 + 12108 mRNA_3740 0.22 -2.3
470,000 + 12108 mRNA_3740 0.22 0.2
470,002 - 12108 mRNA_3740 0.23 -0.8
470,002 - 12108 mRNA_3740 0.23 1.3
470,018 - 12108 mRNA_3740 0.27 -0.2
470,041 + 12108 mRNA_3740 0.32 0.1
470,052 - 12108 mRNA_3740 0.34 -0.7
470,064 - 12108 mRNA_3740 0.37 1.0
470,121 + 12108 mRNA_3740 0.49 0.4
470,192 + 12108 mRNA_3740 0.65 0.6
470,250 + 12108 mRNA_3740 0.78 0.3
470,259 + 12108 mRNA_3740 0.80 0.5
470,291 + 12108 mRNA_3740 0.87 -1.7
470,325 + -0.3
470,430 - -0.3
470,478 - 0.3
470,716 - 12109 mRNA_3741 0.10 2.3
470,861 - 12109 mRNA_3741 0.15 -1.0
471,193 + 12109 mRNA_3741 0.24 0.3
471,334 - 12109 mRNA_3741 0.28 1.6
472,400 + 12109 mRNA_3741 0.57 0.8
473,174 - 12109 mRNA_3741 0.79 -1.2
474,092 - -0.3
474,873 - 12110 mRNA_3742 0.19 1.1