Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3737

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3736: 12104 - K00573 E2.1.1.77, pcm protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 463337 to 464527 12104 mRNA_3737: 12105 - BLAST TPR-2 domain protein [Rhizoctonia solani AG-3 Rhs1AP], at 464797 to 466425 12105 mRNA_3738: 12106 - K06689 UBE2D, UBC4, UBC5 ubiquitin-conjugating enzyme E2 D, at 466684 to 467899 12106

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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463,990 - 12104 mRNA_3736 0.55 -1.3
464,462 + -1.8
464,575 + -1.8
464,577 - -0.9
464,587 + -0.2
464,594 + 1.0
464,602 + -1.6
464,608 + 0.1
464,731 - 0.1
465,084 + 12105 mRNA_3737 0.18 -2.5
465,616 - 12105 mRNA_3737 0.50 -0.8
466,095 - 12105 mRNA_3737 0.80 0.3
466,341 + 1.0
466,356 - -1.2
466,379 + 1.2
466,470 - 0.1
466,619 - -1.2
466,622 - 1.0
466,622 - -0.2
466,628 - 0.8
466,636 - -1.4
466,646 - -0.7
466,658 - -0.8