Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3652

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3651: 12019 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 258338 to 258829 12019 mRNA_3652: 12020 - K17278 PGRMC1_2 membrane-associated progesterone receptor component, at 259462 to 260271 12020 mRNA_3653: 12021 - KOG2437 Muskelin, at 260397 to 263923 12021

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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258,563 + 12019 mRNA_3651 0.46 -0.6
258,579 - 12019 mRNA_3651 0.49 -0.2
258,584 - 12019 mRNA_3651 0.50 0.9
258,588 + 12019 mRNA_3651 0.51 0.6
258,589 + 12019 mRNA_3651 0.51 1.0
258,590 + 12019 mRNA_3651 0.51 -0.1
258,876 + -1.2
258,882 - -1.0
258,982 - -0.6
259,004 - -0.7
259,010 - 0.6
259,011 + 2.7
259,110 - -0.1
259,149 - 0.0
259,306 + 0.1
259,431 - 0.6
259,459 + 0.4
259,576 - 12020 mRNA_3652 0.14 0.9
259,600 + 12020 mRNA_3652 0.17 -0.7
259,727 + 12020 mRNA_3652 0.33 0.1
259,736 - 12020 mRNA_3652 0.34 -1.1
259,766 + 12020 mRNA_3652 0.38 1.1
259,915 + 12020 mRNA_3652 0.56 0.1
260,019 + 12020 mRNA_3652 0.69 1.5
260,029 + 12020 mRNA_3652 0.70 -0.7
260,045 + 12020 mRNA_3652 0.72 -1.5
260,322 - 1.7
260,324 + -1.6
260,329 - 1.8
260,330 + 1.6
260,335 + -0.4
260,336 + 0.1
260,340 + -3.0
260,458 - -0.3
260,490 + -0.2
260,498 + -2.5
260,517 + -0.4
260,620 - -1.0
260,620 - -0.1
260,659 + -0.9
260,772 + 12021 mRNA_3653 0.11 -1.7
260,779 + 12021 mRNA_3653 0.11 1.2
260,781 + 12021 mRNA_3653 0.11 -0.5
260,787 + 12021 mRNA_3653 0.11 0.5
260,792 + 12021 mRNA_3653 0.11 -1.1
260,816 + 12021 mRNA_3653 0.12 0.2
260,928 - 12021 mRNA_3653 0.15 0.1
260,947 + 12021 mRNA_3653 0.16 -2.0
261,105 + 12021 mRNA_3653 0.20 0.7