Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3628

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3627: 11995 - SUPERFAMILY--SSF51110,SUPERFAMILY--SSF51126, at 199548 to 202220 11995 mRNA_3628: 11996 - K10849 ERCC1 DNA excision repair protein ERCC-1, at 202614 to 203898 11996 mRNA_3629: 11997 - Hypothetical Protein, at 203983 to 204971 11997

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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201,792 - 11995 mRNA_3627 0.84 1.2
201,941 - 11995 mRNA_3627 0.90 0.8
201,976 - 0.1
201,976 + 0.6
202,114 - -0.9
202,243 + 1.9
202,370 + 1.2
202,374 + 0.9
202,391 - 0.1
202,395 + -0.4
202,401 + 0.5
202,409 - 1.2
202,529 - 0.9
202,539 + 0.1
202,545 - 0.9
202,548 - 0.4
202,555 - -1.4
202,557 + -0.5
202,564 - 1.3
202,613 - 1.3
202,685 - 0.7
202,687 - 0.3
202,701 + -0.2
202,747 - 11996 mRNA_3628 0.10 0.9
202,786 + 11996 mRNA_3628 0.13 2.8
202,855 + 11996 mRNA_3628 0.19 -0.3
202,967 + 11996 mRNA_3628 0.27 -0.5
202,998 + 11996 mRNA_3628 0.30 -1.1
203,138 - 11996 mRNA_3628 0.41 -2.1
203,147 - 11996 mRNA_3628 0.41 -0.1
203,267 + 11996 mRNA_3628 0.51 0.7
203,724 - 11996 mRNA_3628 0.86 0.2
203,731 - 11996 mRNA_3628 0.87 0.5
203,861 + 2.0
204,192 + 11997 mRNA_3629 0.21 -0.4
204,585 - 11997 mRNA_3629 0.61 -0.5
204,704 - 11997 mRNA_3629 0.73 0.2