Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3618

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175125 to 177580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986 mRNA_3619: 11987 - HMMPfam-X-Pro dipeptidyl-peptidase (S15 family)-PF02129,HMMPfam-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-PF08530,SMART-X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain-SM00939,SUPERFAMILY--SSF49785,SUPERFAMILY--SSF53474,TIGRFAM-/NonD hydrolase CocE/NonD family protein-TIGR00976, at 179234 to 181455 11987

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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177,363 + 0.1
177,377 - -1.3
177,390 - -0.2
177,498 + -0.6
177,531 + 0.1
177,654 - 0.2
177,654 - 1.1
177,655 - -1.1
177,661 - 1.8
177,661 + 0.4
177,669 - 0.3
177,672 + 0.7
177,673 + 0.3
177,674 + -0.6
177,675 + 0.6
177,680 - 0.9
177,682 - 0.6
177,691 - -0.1
177,696 + -0.5
177,709 - -0.2
177,710 - 1.2
177,711 - 0.3
177,713 - 0.9
177,717 - -0.3
177,727 - 2.2
177,736 - -0.4
177,736 - -0.8
177,737 + -0.8
177,737 - 1.0
177,743 + -0.8
177,752 + 0.3
177,754 + -0.1
177,755 - -1.1
177,759 - -1.7
177,762 - 1.2
177,763 - 3.2
177,771 - -0.7
177,778 + 0.4
177,787 - 1.7
177,787 - 0.6
177,789 - 0.8
177,791 - 0.9
177,797 - 0.0
177,802 + -0.8
177,804 + -0.4
177,833 - 0.1
177,858 + -1.4
177,877 + -1.6
177,883 - -0.2
177,968 - 0.7
177,979 - 2.0
177,981 + -1.0
177,982 - -0.2
178,124 + -0.9
178,158 - -0.1
178,269 + 0.3
178,440 + 11986 mRNA_3618 0.27 0.9
178,539 + 11986 mRNA_3618 0.41 0.5
178,679 + 11986 mRNA_3618 0.61 0.3
178,731 + 11986 mRNA_3618 0.69 0.4
178,850 - 11986 mRNA_3618 0.86 1.0
178,851 - 11986 mRNA_3618 0.86 1.2
178,856 + 11986 mRNA_3618 0.87 -0.1
179,128 - -0.3
179,134 + 2.3
179,163 - 0.9
179,193 - 0.1
179,197 + -1.0
179,201 + 0.0
179,324 - 0.7
179,662 - 11987 mRNA_3619 0.19 -0.3