Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3617

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3616: 11984 - K11600 RRP41, EXOSC4, SKI6 exosome complex component RRP41, at 173211 to 174376 11984 mRNA_3617: 11985 - KOG0254 Predicted transporter (major facilitator superfamily), at 175125 to 177580 11985 mRNA_3618: 11986 - HMMPfam-Cupin domain-PF07883,SUPERFAMILY--SSF51182, at 178257 to 178945 11986

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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174,397 + -1.4
174,411 + -0.4
174,529 - 0.5
174,549 - 1.2
174,563 - 0.8
174,571 + 0.5
174,700 + -1.5
175,006 + -1.8
175,144 - 0.9
175,147 - -0.8
175,409 + 11985 mRNA_3617 0.12 -0.7
175,574 + 11985 mRNA_3617 0.18 1.1
176,185 - 11985 mRNA_3617 0.43 -1.4
176,477 - 11985 mRNA_3617 0.55 0.6
176,750 + 11985 mRNA_3617 0.66 0.1
177,363 + 0.1
177,377 - -1.3
177,390 - -0.2
177,498 + -0.6
177,531 + 0.1
177,654 - 0.2
177,654 - 1.1
177,655 - -1.1
177,661 - 1.8
177,661 + 0.4
177,669 - 0.3
177,672 + 0.7
177,673 + 0.3
177,674 + -0.6
177,675 + 0.6
177,680 - 0.9
177,682 - 0.6
177,691 - -0.1
177,696 + -0.5
177,709 - -0.2
177,710 - 1.2
177,711 - 0.3
177,713 - 0.9
177,717 - -0.3
177,727 - 2.2
177,736 - -0.4
177,736 - -0.8
177,737 + -0.8
177,737 - 1.0
177,743 + -0.8
177,752 + 0.3
177,754 + -0.1
177,755 - -1.1
177,759 - -1.7
177,762 - 1.2
177,763 - 3.2
177,771 - -0.7
177,778 + 0.4
177,787 - 1.7
177,787 - 0.6
177,789 - 0.8
177,791 - 0.9
177,797 - 0.0
177,802 + -0.8
177,804 + -0.4
177,833 - 0.1
177,858 + -1.4
177,877 + -1.6
177,883 - -0.2
177,968 - 0.7
177,979 - 2.0
177,981 + -1.0
177,982 - -0.2
178,124 + -0.9
178,158 - -0.1
178,269 + 0.3
178,440 + 11986 mRNA_3618 0.27 0.9
178,539 + 11986 mRNA_3618 0.41 0.5