Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3612

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3610: 11978 - K09567 PPIH, CYPH peptidyl-prolyl isomerase H (cyclophilin H), at 164681 to 165477 11978 mRNA_3611: 11979 - Hypothetical Protein, at 165576 to 165896 11979 mRNA_3612: 11980 - Hypothetical Protein, at 165925 to 166786 11980 mRNA_3613: 11981 - K09518 DNAJB12 DnaJ homolog subfamily B member 12, at 166931 to 168714 11981

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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165,672 - 11979 mRNA_3611 0.30 0.5
165,674 - 11979 mRNA_3611 0.31 -0.3
165,781 + 11979 mRNA_3611 0.64 0.4
165,829 + 11979 mRNA_3611 0.79 0.3
165,845 - 11979 mRNA_3611 0.84 -0.4
165,959 - -1.6
165,966 + -1.7
166,111 - 11980 mRNA_3612 0.22 -2.4
166,253 - 11980 mRNA_3612 0.38 0.3
166,526 + 11980 mRNA_3612 0.70 -1.1
166,548 - 11980 mRNA_3612 0.72 -0.1
166,652 + 11980 mRNA_3612 0.84 0.6
166,659 + 11980 mRNA_3612 0.85 -1.2
166,672 + 11980 mRNA_3612 0.87 -1.4
166,679 + 11980 mRNA_3612 0.87 0.7
166,696 + 11980 mRNA_3612 0.89 -0.7
166,838 + -1.6
166,842 - 1.3
166,855 - -0.5
166,932 + -0.9
166,954 - 0.8
166,963 + 2.0
167,121 - 11981 mRNA_3613 0.11 1.3
167,140 + 11981 mRNA_3613 0.12 0.0
167,251 - 11981 mRNA_3613 0.18 -1.9