Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3553

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3552: 11920 - K10884 XRCC6, KU70, G22P1 ATP-dependent DNA helicase 2 subunit 1, at 30770 to 33816 11920 mRNA_3553: 11921 - Hypothetical Protein, at 34390 to 35973 11921 mRNA_3554: 11922 - KOG0254 Predicted transporter (major facilitator superfamily), at 36108 to 36965 11922

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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33,563 + 1.7
33,870 + 0.2
33,881 + -2.7
33,881 + 0.4
33,897 + -1.3
33,904 + 0.1
34,025 - -1.3
34,032 + -0.1
34,307 + 0.9
34,332 + 0.3
34,357 - 1.1
34,398 + -0.0
34,500 + 0.4
34,728 - 11921 mRNA_3553 0.21 1.8
35,203 - 11921 mRNA_3553 0.51 -2.1
35,655 + 11921 mRNA_3553 0.80 0.1
35,754 - 11921 mRNA_3553 0.86 0.7
35,766 + 11921 mRNA_3553 0.87 -0.4
36,292 - 11922 mRNA_3554 0.21 0.0
36,474 + 11922 mRNA_3554 0.43 -1.6
36,656 + 11922 mRNA_3554 0.64 -0.3
36,808 + 11922 mRNA_3554 0.82 -0.5
36,824 + 11922 mRNA_3554 0.83 2.6
36,913 + 0.0