Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3501

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3500: 11868 - KOG2519 5'-3' exonuclease, at 245700 to 248074 11868 mRNA_3501: 11869 - KOG3791 Predicted RNA-binding protein involved in translational regulation, at 248480 to 250835 11869 mRNA_3502: 11870 - Hypothetical Protein, at 250882 to 251460 11870

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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247,785 + 11868 mRNA_3500 0.88 2.4
247,880 - 0.5
248,273 - 0.3
248,491 - -3.1
248,520 - -0.1
248,614 - 0.8
248,710 - 0.3
248,923 - 11869 mRNA_3501 0.19 -1.7
249,119 + 11869 mRNA_3501 0.27 1.2
249,443 + 11869 mRNA_3501 0.41 -0.1
249,468 + 11869 mRNA_3501 0.42 -2.5
249,952 - 11869 mRNA_3501 0.62 -0.0
250,481 + 11869 mRNA_3501 0.85 1.6
250,615 - -0.6
251,080 + 11870 mRNA_3502 0.34 0.8
251,513 + 0.1
251,519 - -2.0
251,530 - -0.6
251,644 - -2.7
251,652 + 1.9
251,682 + -1.8
251,774 - 1.3