Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3438

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3437: 11805 - K03033 PSMD3, RPN3 26S proteasome regulatory subunit N3, at 97433 to 99630 11805 mRNA_3438: 11806 - KOG1162 Predicted small molecule transporter, at 99777 to 103344 11806 mRNA_3439: 11807 - KOG1703 Adaptor protein Enigma and related PDZ-LIM proteins, at 104043 to 108423 11807

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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99,393 + 11805 mRNA_3437 0.89 0.2
99,712 - -1.2
99,851 + 0.1
100,033 - -0.4
100,201 + 11806 mRNA_3438 0.12 -0.3
100,203 - 11806 mRNA_3438 0.12 -0.1
100,897 + 11806 mRNA_3438 0.31 0.7
100,927 + 11806 mRNA_3438 0.32 -0.0
101,106 - 11806 mRNA_3438 0.37 1.1
101,175 + 11806 mRNA_3438 0.39 -0.1
101,187 + 11806 mRNA_3438 0.40 3.1
101,460 - 11806 mRNA_3438 0.47 -0.3
101,580 + 11806 mRNA_3438 0.51 -0.6
101,765 + 11806 mRNA_3438 0.56 0.2
101,911 - 11806 mRNA_3438 0.60 -0.1
101,952 - 11806 mRNA_3438 0.61 1.8
102,212 - 11806 mRNA_3438 0.68 0.2
102,227 + 11806 mRNA_3438 0.69 0.0
102,381 + 11806 mRNA_3438 0.73 0.3
102,382 - 11806 mRNA_3438 0.73 1.4
102,396 - 11806 mRNA_3438 0.73 0.5
102,943 - 11806 mRNA_3438 0.89 0.6
103,102 + -0.0
103,379 + -1.6
103,397 + 2.0
103,670 - -0.3
103,695 + -1.1
103,777 + -0.1
103,806 - -1.1
103,969 - 2.1
104,231 + -0.0