Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3398

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3397: 11765 - K13370 HSD17B8 17beta-estradiol 17-dehydrogenase / 3alpha(17beta)-hydroxysteroid dehydrogenase (NAD+), at 579279 to 580457 11765 mRNA_3398: 11766 - Hypothetical Protein, at 580854 to 581831 11766 mRNA_3399: 11767 - KOG0733 Nuclear AAA ATPase (VCP subfamily), at 582291 to 585718 11767

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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579,878 - 11765 mRNA_3397 0.51 0.4
579,923 - 11765 mRNA_3397 0.55 1.7
579,923 + 11765 mRNA_3397 0.55 1.2
579,924 - 11765 mRNA_3397 0.55 1.8
579,980 + 11765 mRNA_3397 0.59 1.2
580,068 + 11765 mRNA_3397 0.67 0.5
580,071 - 11765 mRNA_3397 0.67 0.0
580,212 - 11765 mRNA_3397 0.79 -0.3
580,227 - 11765 mRNA_3397 0.80 1.8
580,388 - -0.7
580,725 + 0.7
581,125 + 11766 mRNA_3398 0.28 0.1
581,187 - 11766 mRNA_3398 0.34 1.0
581,252 + 11766 mRNA_3398 0.41 -1.4
581,276 - 11766 mRNA_3398 0.43 2.5
581,276 - 11766 mRNA_3398 0.43 0.8
581,289 + 11766 mRNA_3398 0.44 0.8
581,312 + 11766 mRNA_3398 0.47 1.6
581,400 + 11766 mRNA_3398 0.56 0.8
581,407 + 11766 mRNA_3398 0.57 0.0
581,422 + 11766 mRNA_3398 0.58 -0.7
581,435 - 11766 mRNA_3398 0.59 1.3
581,524 + 11766 mRNA_3398 0.69 0.8
581,554 - 11766 mRNA_3398 0.72 1.0
581,570 + 11766 mRNA_3398 0.73 1.0
581,721 + 11766 mRNA_3398 0.89 3.0
581,729 + 11766 mRNA_3398 0.89 -0.3
581,730 + 11766 mRNA_3398 0.90 -0.2
581,851 - -1.2
581,862 + 0.4
581,882 - 1.1
581,889 - 3.0
581,900 + -1.1
581,912 - -1.4
581,956 + 0.2
581,978 + 1.1
581,983 + 0.3
581,985 - -0.1
581,989 - 1.7
581,993 + 1.0
581,994 - -1.9
582,001 + 0.3
582,007 - 0.9
582,014 + -0.6
582,023 - 0.7
582,026 + 0.1
582,032 + -1.3
582,037 - 1.3
582,039 - 1.9
582,113 - 0.3
582,310 + 0.4
582,311 + 1.4
582,312 + -1.2
582,580 + 0.7
582,721 + 11767 mRNA_3399 0.13 -0.4
582,753 - 11767 mRNA_3399 0.13 0.2