Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3393

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3392: 11760 - HMMPfam-Caffeine-induced death protein 2-PF09774, at 570084 to 570935 11760 mRNA_3393: 11761 - KOG3662 Cell division control protein/predicted DNA repair exonuclease, at 571370 to 574049 11761 mRNA_3394: 11762 - HMMPfam-UreF-PF01730, at 574156 to 575292 11762

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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570,566 - 11760 mRNA_3392 0.57 2.0
570,838 + 11760 mRNA_3392 0.88 -1.1
570,845 + 11760 mRNA_3392 0.89 0.4
570,873 - 0.2
570,874 + 0.3
570,885 - -1.6
570,982 - -0.3
570,990 - 1.0
570,990 - -0.5
570,995 + -0.7
571,109 - -0.9
571,369 + 1.9
571,413 + -0.4
571,417 - -0.3
571,442 - 0.6
571,443 + 0.1
571,601 - 0.4
571,730 + 11761 mRNA_3393 0.13 1.0
571,901 + 11761 mRNA_3393 0.20 0.8
572,023 + 11761 mRNA_3393 0.24 -0.4
572,563 - 11761 mRNA_3393 0.45 -0.0
572,600 + 11761 mRNA_3393 0.46 -0.3
572,600 - 11761 mRNA_3393 0.46 -1.0
572,731 - 11761 mRNA_3393 0.51 -1.1
572,868 - 11761 mRNA_3393 0.56 2.4
572,908 + 11761 mRNA_3393 0.57 1.0
573,325 + 11761 mRNA_3393 0.73 -0.9
573,325 + 11761 mRNA_3393 0.73 0.7
573,331 + 11761 mRNA_3393 0.73 -1.8
573,347 + 11761 mRNA_3393 0.74 -1.1
573,455 - 11761 mRNA_3393 0.78 -1.3
573,460 + 11761 mRNA_3393 0.78 1.2
573,471 - 11761 mRNA_3393 0.78 -0.5
573,888 + -1.3
574,167 + -0.6
574,167 + -2.2
574,232 + 3.2
574,246 + -0.8
574,311 + 11762 mRNA_3394 0.14 -1.2
574,394 + 11762 mRNA_3394 0.21 1.4
574,462 - 11762 mRNA_3394 0.27 -0.1
574,555 + 11762 mRNA_3394 0.35 2.6
574,665 + 11762 mRNA_3394 0.45 1.1
574,723 - 11762 mRNA_3394 0.50 0.7
574,792 - 11762 mRNA_3394 0.56 0.4
574,823 + 11762 mRNA_3394 0.59 -0.7
574,826 - 11762 mRNA_3394 0.59 0.1
574,827 - 11762 mRNA_3394 0.59 -0.1
574,832 + 11762 mRNA_3394 0.59 2.2
574,898 - 11762 mRNA_3394 0.65 -1.3
574,928 + 11762 mRNA_3394 0.68 0.2
574,942 + 11762 mRNA_3394 0.69 0.0