Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3388

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3387: 11755 - K01771 plc 1-phosphatidylinositol phosphodiesterase, at 557525 to 558870 11755 mRNA_3388: 11756 - KOG1577 Aldo/keto reductase family proteins, at 559521 to 561050 11756 mRNA_3389: 11757 - K00521 E1.16.1.7 ferric-chelate reductase, at 561833 to 564101 11757

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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558,662 + 11755 mRNA_3387 0.84 1.2
558,782 + 1.3
558,789 + 0.5
558,906 - -1.1
558,913 - -0.3
558,970 + -0.2
559,068 - -1.3
559,096 + 0.4
559,112 + -1.2
559,158 - 1.6
559,275 - 0.4
560,157 - 11756 mRNA_3388 0.42 0.1
560,262 - 11756 mRNA_3388 0.48 0.2
560,662 + 11756 mRNA_3388 0.75 1.5
561,111 - 2.9
561,114 + 0.1
561,120 + 1.5
561,123 - -0.5
561,130 + -0.5
561,182 + -0.0
561,263 + 1.7
561,267 + 1.3
561,287 + 1.0
561,308 + -0.1
561,315 - 2.3
561,331 + 0.6
561,393 + 2.0
561,400 - -0.9
561,403 + -0.9
561,404 - -0.1
561,411 + 0.2
561,414 - -0.2
561,416 - -1.7
561,418 - 0.6
561,425 - -0.3
561,439 + 0.5
561,448 - 0.2
561,450 + 0.2
561,455 + -0.3
561,460 - -0.2
561,503 - 0.6
561,557 + -1.0
561,587 - 1.9
561,592 - 0.5
561,599 + 0.4
561,603 + -0.5
561,666 - -0.7
561,666 - -1.5
561,680 - 0.5
561,689 + 1.1
561,692 - 2.6
561,705 + -1.7
561,708 - -2.4
561,709 + 0.9
561,709 + -0.0
561,719 + 1.0
561,722 - 1.2
561,726 + 0.7
561,729 - 0.4
561,730 - -0.5
561,731 - -2.4
561,749 - 2.3
561,751 + -0.6
561,754 + -1.6
561,756 + 0.9
561,759 - -2.2
561,895 - 1.9
561,896 + 2.0
561,906 + 0.7
562,013 - -0.3
562,033 - 0.7