Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3300

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3299: 11667 - K19704 PTC1 protein phosphatase PTC1, at 333758 to 335633 11667 mRNA_3300: 11668 - HMMPfam-Amidohydrolase-PF13147,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 335794 to 339454 11668 mRNA_3301: 11669 - K08197 ARN MFS transporter, SIT family, siderophore-iron-H+ symporter, at 339708 to 341858 11669

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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334,844 - 11667 mRNA_3299 0.58 1.4
334,844 + 11667 mRNA_3299 0.58 1.3
334,894 + 11667 mRNA_3299 0.61 0.6
335,164 - 11667 mRNA_3299 0.75 0.4
335,184 - 11667 mRNA_3299 0.76 0.5
335,440 + 11667 mRNA_3299 0.90 0.0
335,458 - 0.9
335,463 - -0.0
335,607 + 1.1
335,660 - 0.3
335,759 + 0.1
335,775 + 0.7
335,923 - -0.4
335,929 - -1.5
336,044 + 1.5
336,359 + 11668 mRNA_3300 0.15 2.1
336,359 - 11668 mRNA_3300 0.15 -0.0
336,838 - 11668 mRNA_3300 0.29 -0.0
337,282 - 11668 mRNA_3300 0.41 -2.2
337,435 - 11668 mRNA_3300 0.45 0.1
337,445 + 11668 mRNA_3300 0.45 -0.6
337,727 - 11668 mRNA_3300 0.53 2.0
338,058 + 11668 mRNA_3300 0.62 -0.2
338,176 + 11668 mRNA_3300 0.65 2.1
338,200 - 11668 mRNA_3300 0.66 -0.1
338,426 - 11668 mRNA_3300 0.72 -0.2
338,744 + 11668 mRNA_3300 0.81 -0.3
338,907 + 11668 mRNA_3300 0.85 0.2
339,030 - 11668 mRNA_3300 0.88 -0.5
339,037 + 11668 mRNA_3300 0.89 0.7
339,178 - 0.5
339,189 - -0.8
339,204 + 1.1
339,208 - -2.5
339,215 + -1.3
339,331 + 0.3
339,338 + 0.4
339,350 + 1.3
339,362 + -2.0
339,416 + 0.1
339,484 - -0.8
339,513 + 1.5
339,521 - -0.0
339,533 + 0.3
339,539 - 0.9
339,550 + -0.9
339,554 + 0.0
339,557 + -0.2
339,648 + 0.6
339,649 + -0.2
339,659 - -0.5
339,670 - 0.2
339,676 + -0.4
339,872 + 0.0
339,891 - 0.3
339,909 + -0.5
339,927 + 11669 mRNA_3301 0.10 0.0
339,956 - 11669 mRNA_3301 0.12 -0.7
339,971 - 11669 mRNA_3301 0.12 0.7
340,046 - 11669 mRNA_3301 0.16 -1.1
340,096 + 11669 mRNA_3301 0.18 1.2
340,215 - 11669 mRNA_3301 0.24 -1.5
340,350 + 11669 mRNA_3301 0.30 0.1