Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3280

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3280: 11648 - Hypothetical Protein, at 281870 to 282355 11648 mRNA_3281: 11649 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 282571 to 284691 11649

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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280,941 - 2.7
281,228 - -0.1
281,230 + -1.2
281,383 - -0.4
281,400 - 1.6
281,400 - -0.2
281,408 + -0.5
281,408 + 1.4
281,413 + -0.5
281,523 - 0.3
281,542 + 1.0
281,545 + -0.4
281,546 - -0.4
281,553 + -1.1
281,575 - 0.1
281,671 - -0.4
281,689 - -0.0
281,690 - 0.5
281,690 - 0.0
281,692 - -0.9
281,692 - 0.3
281,692 - -2.0
281,696 - 1.2
281,696 - -1.8
281,701 + 0.2
281,712 - -0.6
281,713 - 1.0
281,713 - 2.5
281,716 + 0.2
281,718 - -0.6
281,719 - -0.3
281,719 + 0.5
281,720 + -0.6
281,729 + 0.0
281,771 + -1.4
281,876 - -2.2
281,885 - 2.9
281,886 + 0.0
281,995 - 11648 mRNA_3280 0.26 0.4
282,289 - 11648 mRNA_3280 0.86 -2.5
282,292 + 11648 mRNA_3280 0.87 0.4
282,300 - 11648 mRNA_3280 0.88 0.8
282,301 + 11648 mRNA_3280 0.89 1.1
282,301 - 11648 mRNA_3280 0.89 0.2
282,312 + 1.2
282,314 - 0.4
282,320 - 0.2
282,327 + -0.3
282,329 + 0.3
282,330 - -1.2
282,331 + 1.9
282,333 - -0.1
282,334 - -0.4
282,335 + -1.3
282,336 + -2.6
282,340 + 0.0
282,341 + -0.6
282,342 + -1.2
282,342 + -0.1
282,345 + -0.3
282,349 + 0.6
282,350 + -0.7
282,351 - -0.4
282,358 - 0.8
282,358 - -1.6
282,369 - 0.6
282,380 - 0.2
282,402 + -0.6
282,410 - 0.2
282,412 + 0.9
282,413 + 0.7
282,428 + 0.3
282,446 - -2.4
282,449 + 0.3
282,456 + -0.8
282,490 + -1.5
282,492 + -0.1
282,492 + -1.1
282,493 + -1.0
282,494 + -0.5
282,498 + 0.9
282,505 + 0.4
282,509 - -1.3
282,515 + 0.0
282,515 + -0.1
282,517 + 0.6
282,517 - 1.0
282,518 + -0.5
282,519 - -0.5
282,632 - -0.1
282,640 - 0.3
282,648 - 2.7
282,650 - 1.6
282,650 - -1.7
282,656 - 0.1
282,661 + -0.2
282,662 + 0.7
282,665 - 0.5
282,667 + -3.7
282,675 + 1.0
282,679 + -1.5
282,683 + -0.2
282,707 + -0.3
282,780 + -2.0
282,805 - 11649 mRNA_3281 0.11 1.9
282,813 - 11649 mRNA_3281 0.11 -0.8
282,818 + 11649 mRNA_3281 0.12 -0.2
282,829 - 11649 mRNA_3281 0.12 -1.1
282,859 - 11649 mRNA_3281 0.14 0.7
282,860 - 11649 mRNA_3281 0.14 -0.7
282,870 - 11649 mRNA_3281 0.14 0.2
282,941 - 11649 mRNA_3281 0.17 -0.4
282,985 - 11649 mRNA_3281 0.20 -0.2
282,995 + 11649 mRNA_3281 0.20 0.4
283,158 + 11649 mRNA_3281 0.28 -0.6