Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3257

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3256: 11624 - K01681 ACO, acnA aconitate hydratase, at 224964 to 230364 11624 mRNA_3257: 11625 - K13869 SLC7A11 solute carrier family 7 (L-type amino acid transporter), member 11, at 230721 to 232745 11625 mRNA_3258: 11626 - K00791 miaA, TRIT1 tRNA dimethylallyltransferase, at 232790 to 234851 11626

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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229,774 + 11624 mRNA_3256 0.89 1.4
229,774 + 11624 mRNA_3256 0.89 0.1
229,904 - -0.4
230,078 - 0.5
230,080 + -0.7
230,234 - 1.8
230,481 + 0.0
230,523 + -0.5
230,675 + 0.2
230,677 + -3.5
230,766 + 1.8
230,815 - -0.5
230,819 + -0.7
230,841 + 1.3
230,977 + 11625 mRNA_3257 0.13 -0.2
231,153 + 11625 mRNA_3257 0.21 0.7
231,241 - 11625 mRNA_3257 0.26 -0.6
231,250 - 11625 mRNA_3257 0.26 0.1
231,265 + 11625 mRNA_3257 0.27 0.0
231,285 + 11625 mRNA_3257 0.28 -0.5
231,299 + 11625 mRNA_3257 0.29 -2.3
231,420 - 11625 mRNA_3257 0.35 -0.9
231,564 + 11625 mRNA_3257 0.42 -0.1
231,668 - 11625 mRNA_3257 0.47 -0.3
231,710 - 11625 mRNA_3257 0.49 0.0
231,806 + 11625 mRNA_3257 0.54 -2.0
231,859 + 11625 mRNA_3257 0.56 0.1
231,861 + 11625 mRNA_3257 0.56 -0.1
231,870 - 11625 mRNA_3257 0.57 0.2
231,888 + 11625 mRNA_3257 0.58 -1.0
232,071 + 11625 mRNA_3257 0.67 0.3
232,298 + 11625 mRNA_3257 0.78 -1.7
232,425 - 11625 mRNA_3257 0.84 0.1
232,747 - 1.0
232,883 + -1.0