Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3237

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3236: 11604 - K01755 argH, ASL argininosuccinate lyase, at 173698 to 175795 11604 mRNA_3237: 11605 - K10357 MYO5 myosin V, at 176488 to 184590 11605 mRNA_3238: 11606 - BLAST RNA replication protein [Rhizoctonia solani], at 184726 to 188428 11606

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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175,721 - -2.1
175,861 - 0.4
176,024 - -1.3
176,050 + 0.2
176,179 - -0.5
176,189 - -1.4
176,190 + -0.1
176,192 + -0.3
176,192 + 1.8
176,195 + -0.4
176,198 - 1.7
176,203 + -0.0
176,209 - -0.4
176,216 - -0.0
176,319 + 1.5
176,327 + -0.0
176,329 - 0.8
176,329 - -0.2
176,335 + 0.8
176,343 + -0.5
176,345 + 1.0
176,346 - -0.6
176,347 - -1.2
176,348 + -0.2
176,350 + 0.1
176,351 - -0.3
176,361 + 1.8
176,371 + 1.5
176,379 + -1.0
176,502 - 0.5
176,510 - 1.8
176,579 - -0.1
176,615 - 2.8
176,643 + 0.4
177,108 + 2.1
177,378 - 11605 mRNA_3237 0.11 -0.7
177,417 + 11605 mRNA_3237 0.11 0.6
177,532 + 11605 mRNA_3237 0.13 -0.3
177,642 + 11605 mRNA_3237 0.14 1.8
177,650 - 11605 mRNA_3237 0.14 1.8
178,762 + 11605 mRNA_3237 0.28 -0.1
178,933 + 11605 mRNA_3237 0.30 -0.9
178,941 + 11605 mRNA_3237 0.30 -1.1
179,003 - 11605 mRNA_3237 0.31 1.2
179,481 + 11605 mRNA_3237 0.37 0.6
179,868 - 11605 mRNA_3237 0.42 0.8
179,951 + 11605 mRNA_3237 0.43 1.3
180,518 - 11605 mRNA_3237 0.50 2.5
180,524 + 11605 mRNA_3237 0.50 -2.6
180,575 - 11605 mRNA_3237 0.50 -0.0
181,225 - 11605 mRNA_3237 0.58 0.1
181,372 + 11605 mRNA_3237 0.60 0.3
181,528 - 11605 mRNA_3237 0.62 1.6
181,796 + 11605 mRNA_3237 0.66 0.5
182,306 - 11605 mRNA_3237 0.72 2.1
182,393 + 11605 mRNA_3237 0.73 -0.6
182,412 + 11605 mRNA_3237 0.73 -0.0
182,547 + 11605 mRNA_3237 0.75 1.3
182,665 + 11605 mRNA_3237 0.76 -0.8
182,675 + 11605 mRNA_3237 0.76 -0.1
182,686 - 11605 mRNA_3237 0.76 -0.3
182,699 - 11605 mRNA_3237 0.77 0.0
182,724 - 11605 mRNA_3237 0.77 -0.4
182,740 + 11605 mRNA_3237 0.77 -0.1
182,740 + 11605 mRNA_3237 0.77 0.7
182,769 - 11605 mRNA_3237 0.78 0.4
182,772 - 11605 mRNA_3237 0.78 0.0
182,796 - 11605 mRNA_3237 0.78 0.2
182,893 - 11605 mRNA_3237 0.79 -0.1
182,895 - 11605 mRNA_3237 0.79 0.5
182,904 + 11605 mRNA_3237 0.79 -0.0
183,038 + 11605 mRNA_3237 0.81 0.7
183,056 - 11605 mRNA_3237 0.81 -0.3
183,318 - 11605 mRNA_3237 0.84 0.3
183,873 - -1.2
184,060 + -1.0
184,071 - 1.1
184,499 - -1.7
184,501 + -0.5
184,503 + -0.4
184,538 + -0.5
184,766 - -0.9
184,777 + -1.1
184,797 + -0.6
184,834 - -0.2
184,931 + -1.2
184,949 + 0.9
185,051 + 0.1
185,414 - 11606 mRNA_3238 0.19 -0.3
185,529 + 11606 mRNA_3238 0.22 -2.1
185,540 + 11606 mRNA_3238 0.22 -0.4
185,547 + 11606 mRNA_3238 0.22 -1.7