Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3211

Experiments: 40 hrs High Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3210: 11578 - K03512 POLL DNA polymerase lambda, at 98514 to 102281 11578 mRNA_3211: 11579 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 102441 to 104131 11579 mRNA_3212: 11580 - BLAST related to TRX2-thioredoxin II [Melanopsichium pennsy..., at 104334 to 106276 11580

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs High Buoyancy
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101,855 - 11578 mRNA_3210 0.89 0.7
101,872 - 11578 mRNA_3210 0.89 0.0
101,898 + 11578 mRNA_3210 0.90 -0.5
101,944 + 0.2
101,955 + -1.1
102,116 + 0.5
102,222 - -0.8
102,225 + -0.1
102,373 - 1.3
102,389 + 2.6
102,488 + 0.0
102,538 + -0.8
102,706 + 11579 mRNA_3211 0.16 0.6
102,709 - 11579 mRNA_3211 0.16 -0.9
102,825 + 11579 mRNA_3211 0.23 2.0
102,957 + 11579 mRNA_3211 0.31 -0.2
103,001 + 11579 mRNA_3211 0.33 -0.2
103,134 - 11579 mRNA_3211 0.41 0.5
103,218 - 11579 mRNA_3211 0.46 0.2
103,239 - 11579 mRNA_3211 0.47 0.6
103,251 - 11579 mRNA_3211 0.48 -1.5
103,392 - 11579 mRNA_3211 0.56 0.3
103,400 - 11579 mRNA_3211 0.57 -2.8
103,419 + 11579 mRNA_3211 0.58 0.1
103,442 - 11579 mRNA_3211 0.59 -0.8
103,513 - 11579 mRNA_3211 0.63 -0.2
103,741 - 11579 mRNA_3211 0.77 1.0
104,031 + -2.4
104,133 - 1.0
104,271 + -0.3
104,442 + 0.2
104,725 + 11580 mRNA_3212 0.20 1.2
104,820 + 11580 mRNA_3212 0.25 0.8
104,892 - 11580 mRNA_3212 0.29 0.5
105,013 + 11580 mRNA_3212 0.35 -0.3
105,021 - 11580 mRNA_3212 0.35 0.8